miRNA display CGI


Results 61 - 80 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 15680 0.66 0.535984
Target:  5'- cCCGAGgaCgGCucggacggagagGGCUCGGGCuCGGaCGACg -3'
miRNA:   3'- -GGCUC--GgCG------------CCGAGCCCGcGUC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 17074 0.69 0.372145
Target:  5'- cCCGGGCCGCcgccgggucaGGCgcgcgcccgUCgGGGCGCcgggggcuccGGCGGCg -3'
miRNA:   3'- -GGCUCGGCG----------CCG---------AG-CCCGCG----------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 17406 0.66 0.517331
Target:  5'- gCGuGGCgCGCGGCagcaGGGC-CAGCGAg -3'
miRNA:   3'- gGC-UCG-GCGCCGag--CCCGcGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 17465 0.69 0.392526
Target:  5'- aCGuguuGCCGCGGCguguccucgucggCGGcGCGCcgcugcugcaccAGCGACg -3'
miRNA:   3'- gGCu---CGGCGCCGa------------GCC-CGCG------------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 17819 0.68 0.428626
Target:  5'- cCUGGG-CGCGGCg-GGGCG-GGCGGCc -3'
miRNA:   3'- -GGCUCgGCGCCGagCCCGCgUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 18036 0.69 0.372145
Target:  5'- uCCGAGUCGUccUggGGGCGCAGCGGg -3'
miRNA:   3'- -GGCUCGGCGccGagCCCGCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 18673 0.7 0.307322
Target:  5'- uCCG-GCCGUacgGGUUccaCGGGCGCgcgGGCGGCg -3'
miRNA:   3'- -GGCuCGGCG---CCGA---GCCCGCG---UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 18970 0.68 0.428626
Target:  5'- cCCGAGCaGCgGGCUgcaCGaGGCGUAcgcGCGGCg -3'
miRNA:   3'- -GGCUCGgCG-CCGA---GC-CCGCGU---CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 19055 0.72 0.257259
Target:  5'- aCCGGG-CGCaGGCacUCGGGCGCGcGCGGg -3'
miRNA:   3'- -GGCUCgGCG-CCG--AGCCCGCGU-CGCUg -5'
29409 3' -64.1 NC_006151.1 + 19252 0.71 0.275207
Target:  5'- gCCGAGCgCGUggaagcggGGCUCGuGGCGC-GCGGg -3'
miRNA:   3'- -GGCUCG-GCG--------CCGAGC-CCGCGuCGCUg -5'
29409 3' -64.1 NC_006151.1 + 19292 0.67 0.508102
Target:  5'- aCCgGGGCCaGCGGCgCGGGCGgcCGGUcGCc -3'
miRNA:   3'- -GG-CUCGG-CGCCGaGCCCGC--GUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 19458 0.74 0.18153
Target:  5'- -gGAGCCGCGGCaccUCGGGCgGCAGguagucgcCGAUg -3'
miRNA:   3'- ggCUCGGCGCCG---AGCCCG-CGUC--------GCUG- -5'
29409 3' -64.1 NC_006151.1 + 19497 0.66 0.564381
Target:  5'- cCCGcuCCGgGGcCUCGGGgaCGCAggcGCGGCc -3'
miRNA:   3'- -GGCucGGCgCC-GAGCCC--GCGU---CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 20099 0.76 0.12936
Target:  5'- uUGGGCUGgGGgaCGGGCGCcccGGCGACg -3'
miRNA:   3'- gGCUCGGCgCCgaGCCCGCG---UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 20126 0.71 0.281409
Target:  5'- nCgGGGCUGgGGggCGGGCGCcgcgggGGCGGCg -3'
miRNA:   3'- -GgCUCGGCgCCgaGCCCGCG------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 20179 0.76 0.127466
Target:  5'- cCCGGGUCGCGGC-CGGuagaugcgauuccgcGCGCAGCGcCg -3'
miRNA:   3'- -GGCUCGGCGCCGaGCC---------------CGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 20301 0.67 0.480852
Target:  5'- cCCGGgcgcccGCCGUGGCguuGGCGgCGGCGAg -3'
miRNA:   3'- -GGCU------CGGCGCCGagcCCGC-GUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 20447 0.7 0.342224
Target:  5'- uCgGAGCgG-GGCUCGGGgGUGGCGcCg -3'
miRNA:   3'- -GgCUCGgCgCCGAGCCCgCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 20781 0.67 0.463085
Target:  5'- gCCGGGCgaGCGGCUCGcgcuuGCGCAGaCaGCc -3'
miRNA:   3'- -GGCUCGg-CGCCGAGCc----CGCGUC-GcUG- -5'
29409 3' -64.1 NC_006151.1 + 21309 0.74 0.173071
Target:  5'- aCCGAGCgGUGGCgCGagacgcccGGCGCGGCGGg -3'
miRNA:   3'- -GGCUCGgCGCCGaGC--------CCGCGUCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.