miRNA display CGI


Results 101 - 120 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 31237 0.66 0.545399
Target:  5'- gCCG-GCC-CGGCgagcgagCGGGCG-GGCGAg -3'
miRNA:   3'- -GGCuCGGcGCCGa------GCCCGCgUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 31685 0.71 0.287084
Target:  5'- gCCGGGCCGCcgagccGGCcgcgccaUUGGGCGCcgGGCGGa -3'
miRNA:   3'- -GGCUCGGCG------CCG-------AGCCCGCG--UCGCUg -5'
29409 3' -64.1 NC_006151.1 + 31757 0.75 0.168975
Target:  5'- aCGcGCCuGCGGCggCGGGCGCgcgccgGGCGGCu -3'
miRNA:   3'- gGCuCGG-CGCCGa-GCCCGCG------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 32568 0.72 0.234833
Target:  5'- cCCGGGCaccCGCGGC-CGGGCGgAGgGGg -3'
miRNA:   3'- -GGCUCG---GCGCCGaGCCCGCgUCgCUg -5'
29409 3' -64.1 NC_006151.1 + 33127 0.68 0.411972
Target:  5'- gCGuGCCGCgGGCcgagugUCGGGCGaguGCGAg -3'
miRNA:   3'- gGCuCGGCG-CCG------AGCCCGCgu-CGCUg -5'
29409 3' -64.1 NC_006151.1 + 33934 0.66 0.554866
Target:  5'- aUCGAGgcCCGCgcgccccgggGGCUCGGG-GCGG-GACg -3'
miRNA:   3'- -GGCUC--GGCG----------CCGAGCCCgCGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 34615 0.76 0.142661
Target:  5'- gCCGAGCgCGaGGCgCGGGUGgGGCGACc -3'
miRNA:   3'- -GGCUCG-GCgCCGaGCCCGCgUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 35476 0.66 0.562475
Target:  5'- gCCGgcGGCCGCcaucuugGGC-CGGGCaugcaaaGCAGaCGGCa -3'
miRNA:   3'- -GGC--UCGGCG-------CCGaGCCCG-------CGUC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 36036 0.66 0.553917
Target:  5'- cCCGGcGCCGCGGCUCcuccGGCGaggaucuccucuuCGGCccgGGCg -3'
miRNA:   3'- -GGCU-CGGCGCCGAGc---CCGC-------------GUCG---CUG- -5'
29409 3' -64.1 NC_006151.1 + 36187 0.71 0.28772
Target:  5'- gCCccGCCGgGGCUCGGGCGagaucguggugcUAGaCGACg -3'
miRNA:   3'- -GGcuCGGCgCCGAGCCCGC------------GUC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 36341 0.67 0.488954
Target:  5'- uCCGGGCCcCGGC-CGccgaccccGGCagcacucGCAGCGGCa -3'
miRNA:   3'- -GGCUCGGcGCCGaGC--------CCG-------CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 36620 0.72 0.251493
Target:  5'- gCCGGGCCGgucuCGGCgcccGGCgGCGGCGGCg -3'
miRNA:   3'- -GGCUCGGC----GCCGagc-CCG-CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 36935 0.72 0.251493
Target:  5'- gCCGcGGCCGCGGCUUcaGCagcuccagcaGCAGCGGCa -3'
miRNA:   3'- -GGC-UCGGCGCCGAGccCG----------CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 37454 0.69 0.387759
Target:  5'- uCCGccaGGCCGCGGCcCGcuaccGCGCcGCGGCc -3'
miRNA:   3'- -GGC---UCGGCGCCGaGCc----CGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 37860 0.67 0.508102
Target:  5'- cCCGGGCCGCGccgCGGacccccGCGCcggggaGGCGACc -3'
miRNA:   3'- -GGCUCGGCGCcgaGCC------CGCG------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 38275 0.67 0.484445
Target:  5'- aCGuGGCCGCGGCcCGGcucgccgaggccgccGCGCGGCccgGGCc -3'
miRNA:   3'- gGC-UCGGCGCCGaGCC---------------CGCGUCG---CUG- -5'
29409 3' -64.1 NC_006151.1 + 38384 0.7 0.342224
Target:  5'- gCCGGcGCCgGCGGCggCGGGCGCccccucCGGCc -3'
miRNA:   3'- -GGCU-CGG-CGCCGa-GCCCGCGuc----GCUG- -5'
29409 3' -64.1 NC_006151.1 + 39136 0.67 0.508102
Target:  5'- cCCGcGCC-CGGCcUGGGacccgcgcCGCGGCGGCc -3'
miRNA:   3'- -GGCuCGGcGCCGaGCCC--------GCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 39330 0.73 0.219109
Target:  5'- aCCucuGCuCGCGGCUCGgcgcGGCGCGGCGcCg -3'
miRNA:   3'- -GGcu-CG-GCGCCGAGC----CCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 40067 0.73 0.224248
Target:  5'- aCCGGcCCGCGGgggcCUCGGGCGCcGgGGCc -3'
miRNA:   3'- -GGCUcGGCGCC----GAGCCCGCGuCgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.