miRNA display CGI


Results 41 - 60 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 130848 0.71 0.293495
Target:  5'- gUCGucGCCGuCGGCggcgCGGGCgggaccgcaguggGCGGCGGCg -3'
miRNA:   3'- -GGCu-CGGC-GCCGa---GCCCG-------------CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 130819 0.7 0.320947
Target:  5'- uCCGGGUC-CcGCUCGaGGCGCGGCG-Cg -3'
miRNA:   3'- -GGCUCGGcGcCGAGC-CCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 130725 0.73 0.224248
Target:  5'- -gGGGCCcgcGCGGC-CGcGGCGCAGCGcCa -3'
miRNA:   3'- ggCUCGG---CGCCGaGC-CCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 130680 0.66 0.553917
Target:  5'- gCGGGgCGCGGCgcaggaugucCGGGgGCccgacggGGCGGCc -3'
miRNA:   3'- gGCUCgGCGCCGa---------GCCCgCG-------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 130509 0.71 0.294143
Target:  5'- ---cGCCGCGcGuCUCGGGCGCGGgCGuCg -3'
miRNA:   3'- ggcuCGGCGC-C-GAGCCCGCGUC-GCuG- -5'
29409 3' -64.1 NC_006151.1 + 130406 0.67 0.498943
Target:  5'- gCCucGcCCGCGaGCgCGGGCGCGcCGACc -3'
miRNA:   3'- -GGcuC-GGCGC-CGaGCCCGCGUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 130321 0.73 0.224248
Target:  5'- gCGcGCCGCGcGCUCGGggagcucgcGCGCcGCGGCg -3'
miRNA:   3'- gGCuCGGCGC-CGAGCC---------CGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 130267 0.68 0.44567
Target:  5'- gCCG-GCgCGCGGCcccgaggccgCGGGCGCGcGcCGGCc -3'
miRNA:   3'- -GGCuCG-GCGCCGa---------GCCCGCGU-C-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 129824 0.67 0.480852
Target:  5'- gCgGAGCgCGCGGCggCGuaGCcCAGCGACa -3'
miRNA:   3'- -GgCUCG-GCGCCGa-GCc-CGcGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 129280 0.73 0.203814
Target:  5'- aCGAagCGCGGCgcguuccUCGGGCGCGGCGGa -3'
miRNA:   3'- gGCUcgGCGCCG-------AGCCCGCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 129216 0.67 0.498943
Target:  5'- -gGGGCCGCcagcaggcagcuGGCgCGGGUGCGccccucggugacGCGGCg -3'
miRNA:   3'- ggCUCGGCG------------CCGaGCCCGCGU------------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 128036 0.7 0.327928
Target:  5'- gCGAcGcCCGCGGCagCGGcG-GCAGCGGCg -3'
miRNA:   3'- gGCU-C-GGCGCCGa-GCC-CgCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 127986 0.76 0.13388
Target:  5'- cUCGuGCgGCGGCUCcgcgucgcggucgcgGGGCgGCGGCGACg -3'
miRNA:   3'- -GGCuCGgCGCCGAG---------------CCCG-CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 127903 0.69 0.356964
Target:  5'- uCCGAGCuCGgGGgcccCUCGGGgaGCGGgGGCg -3'
miRNA:   3'- -GGCUCG-GCgCC----GAGCCCg-CGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 127795 0.66 0.564381
Target:  5'- cCCGccGCCGCGcGCggGGGCGCGagguccuuGCGGu -3'
miRNA:   3'- -GGCu-CGGCGC-CGagCCCGCGU--------CGCUg -5'
29409 3' -64.1 NC_006151.1 + 127449 0.67 0.498943
Target:  5'- -aGAGCCgGCGGCgcaCGaaGCGCugGGCGGCg -3'
miRNA:   3'- ggCUCGG-CGCCGa--GCc-CGCG--UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 126081 0.66 0.554866
Target:  5'- -gGGGCCGUGauCUCGGcCGuCGGCGGCa -3'
miRNA:   3'- ggCUCGGCGCc-GAGCCcGC-GUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 125479 0.66 0.517331
Target:  5'- gCCGcgcucGGCCaGCGcGuCUCGGcGCGCaugcucGGCGACg -3'
miRNA:   3'- -GGC-----UCGG-CGC-C-GAGCC-CGCG------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 124120 0.68 0.4371
Target:  5'- cCCGccGCCGUccGGCUCcacGGUGguGCGGCu -3'
miRNA:   3'- -GGCu-CGGCG--CCGAGc--CCGCguCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 123946 0.66 0.564381
Target:  5'- gCCGAcGCC-CGGgaCGGGCGCcacccccaaCGACg -3'
miRNA:   3'- -GGCU-CGGcGCCgaGCCCGCGuc-------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.