miRNA display CGI


Results 61 - 80 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 123887 0.73 0.219109
Target:  5'- gCGcucGCCGCGGCcccgccgUGcGGCGCGGCGGCc -3'
miRNA:   3'- gGCu--CGGCGCCGa------GC-CCGCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 123051 0.69 0.362984
Target:  5'- gCCG-GCCGCGGCgcugcgcgacgcCGaGCGCcGGCGGCg -3'
miRNA:   3'- -GGCuCGGCGCCGa-----------GCcCGCG-UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 122944 0.7 0.340774
Target:  5'- gCCGAcggcggcGCCGCGGg--GGGCGCggacgccGGCGACg -3'
miRNA:   3'- -GGCU-------CGGCGCCgagCCCGCG-------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 122745 0.67 0.489858
Target:  5'- cCCGcgcGGCCGCGaGCUcgacaucaucgaCGGGCuGCucgugGGCGGCu -3'
miRNA:   3'- -GGC---UCGGCGC-CGA------------GCCCG-CG-----UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 122477 0.69 0.387759
Target:  5'- gCCGAgGCCGgGGacgCGGGCG-AGaCGGCg -3'
miRNA:   3'- -GGCU-CGGCgCCga-GCCCGCgUC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 122373 0.71 0.300676
Target:  5'- aCGGGCuCGacgaGGCgcgccgCGGGCGCgcgcuGGCGGCg -3'
miRNA:   3'- gGCUCG-GCg---CCGa-----GCCCGCG-----UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 121919 0.7 0.33502
Target:  5'- gCCGAGggggaCCGCGuGCUgGgGGCGCuggccgccgccGGCGACg -3'
miRNA:   3'- -GGCUC-----GGCGC-CGAgC-CCGCG-----------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 121849 0.68 0.403797
Target:  5'- gCG-GCUGCcGCUgGaGGCGCAGaCGACg -3'
miRNA:   3'- gGCuCGGCGcCGAgC-CCGCGUC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 121704 0.7 0.349539
Target:  5'- gCgGAGCgGCGGCUCGuGGCGguccuGgGGCa -3'
miRNA:   3'- -GgCUCGgCGCCGAGC-CCGCgu---CgCUG- -5'
29409 3' -64.1 NC_006151.1 + 121404 0.69 0.372145
Target:  5'- -gGGGCCuGCGGCgCGGGCGgGGaCGuCg -3'
miRNA:   3'- ggCUCGG-CGCCGaGCCCGCgUC-GCuG- -5'
29409 3' -64.1 NC_006151.1 + 121335 0.69 0.365259
Target:  5'- gCCGAGCUGgugcgcgaccucgagGGCcagaCGGGCGCGGaCGGCg -3'
miRNA:   3'- -GGCUCGGCg--------------CCGa---GCCCGCGUC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 121288 0.69 0.3645
Target:  5'- aCGGGCgCGUGGCcgaccgcgaCGGGCGCuggagcguggaGGCGGCc -3'
miRNA:   3'- gGCUCG-GCGCCGa--------GCCCGCG-----------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 121086 0.72 0.245834
Target:  5'- aCGGGCgGCGGCgcCGGGCuGCA-CGACc -3'
miRNA:   3'- gGCUCGgCGCCGa-GCCCG-CGUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 120750 0.7 0.342224
Target:  5'- cCCG-GCCGCgucauGGCcUGGGUGCGGCGcCc -3'
miRNA:   3'- -GGCuCGGCG-----CCGaGCCCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 120347 0.66 0.564381
Target:  5'- cCCGcguGGCCG-GGCUcgCGGGCGCcuaccAGCGcCc -3'
miRNA:   3'- -GGC---UCGGCgCCGA--GCCCGCG-----UCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 119450 0.66 0.525694
Target:  5'- gUGGGCCGCGGCgacgUGGacgccguGCGCuacGUGGCc -3'
miRNA:   3'- gGCUCGGCGCCGa---GCC-------CGCGu--CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 119052 0.74 0.187668
Target:  5'- gCGGcGCCGCGGCcgccuccgCGGGCGCGcccgucucgcaggccGCGGCg -3'
miRNA:   3'- gGCU-CGGCGCCGa-------GCCCGCGU---------------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 118872 0.72 0.234833
Target:  5'- uUGAGCaGCGGC---GGCGCGGCGGCg -3'
miRNA:   3'- gGCUCGgCGCCGagcCCGCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 118780 0.67 0.498943
Target:  5'- cCUGGacGCgGUGGCgCGcGGCGCGGCGcACc -3'
miRNA:   3'- -GGCU--CGgCGCCGaGC-CCGCGUCGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 118431 0.71 0.267911
Target:  5'- aCGGGCgcggaggugugcgCGCGGCUCGGccuggccgcggacGCGCAcGCGGCc -3'
miRNA:   3'- gGCUCG-------------GCGCCGAGCC-------------CGCGU-CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.