miRNA display CGI


Results 81 - 100 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 118203 0.69 0.367545
Target:  5'- gCCGGGCaCGUGGCcgugguggCGGGCGcCcggaccaccgggcucGGCGGCg -3'
miRNA:   3'- -GGCUCG-GCGCCGa-------GCCCGC-G---------------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 118147 0.68 0.411972
Target:  5'- aCGAcGCCGCGGCgguggcgccgcUGGuGCGCGGCcuGACc -3'
miRNA:   3'- gGCU-CGGCGCCGa----------GCC-CGCGUCG--CUG- -5'
29409 3' -64.1 NC_006151.1 + 117767 0.7 0.314078
Target:  5'- gCCG-GCCGagguauaGGCUcCGGGCGgGGCGcCa -3'
miRNA:   3'- -GGCuCGGCg------CCGA-GCCCGCgUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 117522 0.69 0.356964
Target:  5'- aCGGGCCGC---UCGGGggcccccucccaCGCGGCGACg -3'
miRNA:   3'- gGCUCGGCGccgAGCCC------------GCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 117252 0.68 0.403797
Target:  5'- gCGGGCCcgaGGCgCGGGCcGCGcGCGGCc -3'
miRNA:   3'- gGCUCGGcg-CCGaGCCCG-CGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 117187 0.7 0.316812
Target:  5'- -aGGGCCGCcggggGGCgucguaguaguagaCGGGCGCGGCGuCg -3'
miRNA:   3'- ggCUCGGCG-----CCGa-------------GCCCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 117029 0.67 0.480852
Target:  5'- cCCGGGCCGCaGGCgguaccagccgaagcUGGGCaggucguggucgaGCAGCaGGCg -3'
miRNA:   3'- -GGCUCGGCG-CCGa--------------GCCCG-------------CGUCG-CUG- -5'
29409 3' -64.1 NC_006151.1 + 116316 0.66 0.554866
Target:  5'- cCCGAugacGCCGCGcucGCgCGGGCccGCGGCGu- -3'
miRNA:   3'- -GGCU----CGGCGC---CGaGCCCG--CGUCGCug -5'
29409 3' -64.1 NC_006151.1 + 116227 0.74 0.194905
Target:  5'- gCGAGCCGCGccacggccgagaGCUCGaGGUGCGGCa-- -3'
miRNA:   3'- gGCUCGGCGC------------CGAGC-CCGCGUCGcug -5'
29409 3' -64.1 NC_006151.1 + 115193 0.67 0.480852
Target:  5'- uCC-AGCCaGCGcGCcgCGGGCGCGcgcGCGAUc -3'
miRNA:   3'- -GGcUCGG-CGC-CGa-GCCCGCGU---CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 114898 0.72 0.234833
Target:  5'- cCCGGGCgCGaGGCcCGGGCGCA-CGGCc -3'
miRNA:   3'- -GGCUCG-GCgCCGaGCCCGCGUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 114142 1.09 0.000562
Target:  5'- gCCGAGCCGCGGCUCGGGCGCAGCGACc -3'
miRNA:   3'- -GGCUCGGCGCCGAGCCCGCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 113864 0.66 0.525694
Target:  5'- uUGAGCgacgGCGGCUCcugcGGCGCAagucgucggccgcGCGGCg -3'
miRNA:   3'- gGCUCGg---CGCCGAGc---CCGCGU-------------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 113611 0.71 0.26731
Target:  5'- gCCGAGCgccaggcggacccgCGCGuGCUCuuuGaGCGCGGCGACg -3'
miRNA:   3'- -GGCUCG--------------GCGC-CGAGc--C-CGCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 113078 0.66 0.523831
Target:  5'- aCGAGCgCGCGGCcgUCgccgccgccaccggGGGCGgGGCcGCg -3'
miRNA:   3'- gGCUCG-GCGCCG--AG--------------CCCGCgUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 113038 0.7 0.349539
Target:  5'- gCCGGGUgcugCGCGGCggCGGaGCGCgaGGaCGACg -3'
miRNA:   3'- -GGCUCG----GCGCCGa-GCC-CGCG--UC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 112037 0.75 0.146177
Target:  5'- -gGAGCUGgGGCcggCGGGCggGCGGCGGCg -3'
miRNA:   3'- ggCUCGGCgCCGa--GCCCG--CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 111987 0.66 0.564381
Target:  5'- gUGAGCggUGCGGCUacgacgucgaCGcGGCGgCGGCGAUu -3'
miRNA:   3'- gGCUCG--GCGCCGA----------GC-CCGC-GUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 111658 0.66 0.564381
Target:  5'- gCCGuGaUCGCGGCcagggGGGCGuCGGCGGg -3'
miRNA:   3'- -GGCuC-GGCGCCGag---CCCGC-GUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 109292 0.68 0.454332
Target:  5'- uCCGAGaucgaGCGGCccgccgccUCGgcGGCaGCAGCGGCg -3'
miRNA:   3'- -GGCUCgg---CGCCG--------AGC--CCG-CGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.