miRNA display CGI


Results 101 - 120 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 108762 0.66 0.535984
Target:  5'- gCGAGCCGUGGagaucaacCUCGGGacaucucccCGCGGCcccaguGGCg -3'
miRNA:   3'- gGCUCGGCGCC--------GAGCCC---------GCGUCG------CUG- -5'
29409 3' -64.1 NC_006151.1 + 107004 0.7 0.327928
Target:  5'- gCCGcAGCUggaGCGGCUCucGGCGCugaucGCGGCg -3'
miRNA:   3'- -GGC-UCGG---CGCCGAGc-CCGCGu----CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 106790 0.66 0.554866
Target:  5'- aCCuGGCCGCGGCggcggugcucgUCGGGgcccCGCuGGUGAUc -3'
miRNA:   3'- -GGcUCGGCGCCG-----------AGCCC----GCG-UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 106671 0.79 0.089084
Target:  5'- gCGAgGCCGCGGCgcucggcgcgcCGGGCGCcGGCGACc -3'
miRNA:   3'- gGCU-CGGCGCCGa----------GCCCGCG-UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 106496 0.72 0.244157
Target:  5'- aCGGGCCaGCGGCUggcgcgcgccgugcCGGGCGCGcUGGCc -3'
miRNA:   3'- gGCUCGG-CGCCGA--------------GCCCGCGUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 105546 0.73 0.229489
Target:  5'- cCCGAGCUGCGGCacgacgcccugCGcGCGCuGGCGGCc -3'
miRNA:   3'- -GGCUCGGCGCCGa----------GCcCGCG-UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 104896 0.68 0.403797
Target:  5'- gCGAGgugguggaCGCGGCggCGGcGCGCGaccGCGACg -3'
miRNA:   3'- gGCUCg-------GCGCCGa-GCC-CGCGU---CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 104836 0.73 0.229489
Target:  5'- gCCucGCCGCGGCggaggCGGaccaggcCGCGGCGACg -3'
miRNA:   3'- -GGcuCGGCGCCGa----GCCc------GCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 104785 0.69 0.372145
Target:  5'- gCgGAGCCaugcGCGcGCUCGuGCGCcGCGACc -3'
miRNA:   3'- -GgCUCGG----CGC-CGAGCcCGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 104713 0.69 0.3645
Target:  5'- aCCGAGCUGCuGCgc-GGCGCcGUGACc -3'
miRNA:   3'- -GGCUCGGCGcCGagcCCGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 104614 0.67 0.480852
Target:  5'- gCCGAgaucuGCCGCGcGCUCGaGGa--GGUGACg -3'
miRNA:   3'- -GGCU-----CGGCGC-CGAGC-CCgcgUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 104551 0.69 0.372145
Target:  5'- gCCGAGCUgGCcGCccUGGGCGC-GCGGCg -3'
miRNA:   3'- -GGCUCGG-CGcCGa-GCCCGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 104269 0.66 0.523831
Target:  5'- gCCGGcGCgGCGGCgggcccgccgcugcaGGcGCuGCAGCGGCu -3'
miRNA:   3'- -GGCU-CGgCGCCGag-------------CC-CG-CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 104089 0.66 0.553917
Target:  5'- gCCGAGCagcacgccuucgaCGCGGCcgaguUCGuGCGCcugcGCGACg -3'
miRNA:   3'- -GGCUCG-------------GCGCCG-----AGCcCGCGu---CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 104034 0.7 0.327928
Target:  5'- -gGAGCgCGCGcagcgccaGCUCuGGGCGCGcGCGGCc -3'
miRNA:   3'- ggCUCG-GCGC--------CGAG-CCCGCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 103993 0.66 0.554866
Target:  5'- gCG-GCCGUGGCggcCGuggaGGCGCGccgcGCGGCg -3'
miRNA:   3'- gGCuCGGCGCCGa--GC----CCGCGU----CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 103822 0.67 0.498943
Target:  5'- gCCGuGGCgGCGGCcguggagaugcUCGGGCgGCuGCGcGCg -3'
miRNA:   3'- -GGC-UCGgCGCCG-----------AGCCCG-CGuCGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 103762 0.75 0.164966
Target:  5'- gCGcGCCGCGGCgcugcgcgagUCGGaGCGCuGGCGGCg -3'
miRNA:   3'- gGCuCGGCGCCG----------AGCC-CGCG-UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 103676 0.67 0.508102
Target:  5'- gCGGcGCgCGCGGCggGGGUGCuGCG-Cg -3'
miRNA:   3'- gGCU-CG-GCGCCGagCCCGCGuCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 103468 0.71 0.275207
Target:  5'- gCCGGGCaCG-GuGCUCGcGGCGCuGUGGCg -3'
miRNA:   3'- -GGCUCG-GCgC-CGAGC-CCGCGuCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.