miRNA display CGI


Results 121 - 140 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 103364 0.68 0.423588
Target:  5'- gCCGAGCagaacgaccucuacaUGCGGCUgCGcGCGCugcugGGCGACu -3'
miRNA:   3'- -GGCUCG---------------GCGCCGA-GCcCGCG-----UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 103322 0.7 0.33502
Target:  5'- gCCGAGCUGCGcacGCU--GGUGCAgGCGGCg -3'
miRNA:   3'- -GGCUCGGCGC---CGAgcCCGCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 103282 0.68 0.444808
Target:  5'- gCUGAGCCaggagacgcgcgcGCGGCUC--GCGCGGCG-Cg -3'
miRNA:   3'- -GGCUCGG-------------CGCCGAGccCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 103058 0.7 0.314078
Target:  5'- gCCGAGgCGCaGGCgcaCGGGCaccuGgAGCGGCg -3'
miRNA:   3'- -GGCUCgGCG-CCGa--GCCCG----CgUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 102929 0.69 0.3645
Target:  5'- gCCGAGgaGCGGCUgCGcGCGCuggacGCGGCg -3'
miRNA:   3'- -GGCUCggCGCCGA-GCcCGCGu----CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 102676 0.66 0.535984
Target:  5'- uUGAcGCCGUGGacgCGGGgGCgcccggcgcgGGCGGCg -3'
miRNA:   3'- gGCU-CGGCGCCga-GCCCgCG----------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 102598 0.75 0.161042
Target:  5'- gCGAGUCGCagcgGGCgcucgagCGGGCGC-GCGACg -3'
miRNA:   3'- gGCUCGGCG----CCGa------GCCCGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 102503 0.71 0.269116
Target:  5'- -gGAcGCCGCGGCgCGGGacccCGGCGGCg -3'
miRNA:   3'- ggCU-CGGCGCCGaGCCCgc--GUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 101452 0.68 0.403797
Target:  5'- gUCGGcGCCGUgGGCcUGGGCcucuaccgccGCGGCGACg -3'
miRNA:   3'- -GGCU-CGGCG-CCGaGCCCG----------CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 100895 0.66 0.526627
Target:  5'- gCUGcGCCGCGGCgcgCGcGCGCc-CGACg -3'
miRNA:   3'- -GGCuCGGCGCCGa--GCcCGCGucGCUG- -5'
29409 3' -64.1 NC_006151.1 + 100664 0.7 0.327928
Target:  5'- aCGAG-CGCGGCgugCuGGCGCucgucGCGACg -3'
miRNA:   3'- gGCUCgGCGCCGa--GcCCGCGu----CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 100420 0.67 0.489858
Target:  5'- gCCGAcGCgggggcgcugCGCGGCgugauGGCGCAGaCGACg -3'
miRNA:   3'- -GGCU-CG----------GCGCCGagc--CCGCGUC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 100209 0.69 0.356964
Target:  5'- cUCGAugGCCaCGGCcgCGGGCGCcGUGGCc -3'
miRNA:   3'- -GGCU--CGGcGCCGa-GCCCGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 100049 0.66 0.517331
Target:  5'- aCGAGCUGCacgGGgUCGuGCGC-GCGGCc -3'
miRNA:   3'- gGCUCGGCG---CCgAGCcCGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 99548 0.68 0.420249
Target:  5'- aCgGAGCaCGUGGg-CGcGGCGCGcGCGGCg -3'
miRNA:   3'- -GgCUCG-GCGCCgaGC-CCGCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 99069 0.68 0.403797
Target:  5'- gCGAGCUGCgcccgGGCacCGuGGCGCGGCGcCu -3'
miRNA:   3'- gGCUCGGCG-----CCGa-GC-CCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 98945 0.66 0.564381
Target:  5'- gCCGAG--GCGGCgCGGGCcGUggacgaGGCGGCg -3'
miRNA:   3'- -GGCUCggCGCCGaGCCCG-CG------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 98340 0.69 0.372145
Target:  5'- gCGGGCCGCGagacGCccgCGGGCGUGcGCGGg -3'
miRNA:   3'- gGCUCGGCGC----CGa--GCCCGCGU-CGCUg -5'
29409 3' -64.1 NC_006151.1 + 98198 0.7 0.320947
Target:  5'- gUCGcGCCGCgcgGGgUCGaGuGCGCGGCGGCg -3'
miRNA:   3'- -GGCuCGGCG---CCgAGC-C-CGCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 97460 0.69 0.394924
Target:  5'- gCCGAGCUcgggcagGCGGCUCaccgccacguGGacGCGCAGCGcCu -3'
miRNA:   3'- -GGCUCGG-------CGCCGAG----------CC--CGCGUCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.