Results 41 - 60 of 399 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 98945 | 0.66 | 0.564381 |
Target: 5'- gCCGAG--GCGGCgCGGGCcGUggacgaGGCGGCg -3' miRNA: 3'- -GGCUCggCGCCGaGCCCG-CG------UCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 720 | 0.66 | 0.564381 |
Target: 5'- aCCGGGgguCCGCGGg-CGGGgGCuuccgcuccGCGGCg -3' miRNA: 3'- -GGCUC---GGCGCCgaGCCCgCGu--------CGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 120347 | 0.66 | 0.564381 |
Target: 5'- cCCGcguGGCCG-GGCUcgCGGGCGCcuaccAGCGcCc -3' miRNA: 3'- -GGC---UCGGCgCCGA--GCCCGCG-----UCGCuG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 127795 | 0.66 | 0.564381 |
Target: 5'- cCCGccGCCGCGcGCggGGGCGCGagguccuuGCGGu -3' miRNA: 3'- -GGCu-CGGCGC-CGagCCCGCGU--------CGCUg -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 4344 | 0.65 | 0.572981 |
Target: 5'- nCGAaggcGgCGCGGacgCGGGCGCAGagggccuCGACg -3' miRNA: 3'- gGCU----CgGCGCCga-GCCCGCGUC-------GCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 61772 | 0.66 | 0.564381 |
Target: 5'- gCCGugguGCUGCGGCgCGaGGC-CGGcCGGCu -3' miRNA: 3'- -GGCu---CGGCGCCGaGC-CCGcGUC-GCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 35476 | 0.66 | 0.562475 |
Target: 5'- gCCGgcGGCCGCcaucuugGGC-CGGGCaugcaaaGCAGaCGGCa -3' miRNA: 3'- -GGC--UCGGCG-------CCGaGCCCG-------CGUC-GCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 27622 | 0.66 | 0.545399 |
Target: 5'- cCCGAGCC-CGGCcgccccgaCGGGUgGgGGUGGCu -3' miRNA: 3'- -GGCUCGGcGCCGa-------GCCCG-CgUCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 31237 | 0.66 | 0.545399 |
Target: 5'- gCCG-GCC-CGGCgagcgagCGGGCG-GGCGAg -3' miRNA: 3'- -GGCuCGGcGCCGa------GCCCGCgUCGCUg -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 82421 | 0.66 | 0.545399 |
Target: 5'- cCCGAGaggCGCgGGCgcucgcgCGGGCGCuGC-ACa -3' miRNA: 3'- -GGCUCg--GCG-CCGa------GCCCGCGuCGcUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 104089 | 0.66 | 0.553917 |
Target: 5'- gCCGAGCagcacgccuucgaCGCGGCcgaguUCGuGCGCcugcGCGACg -3' miRNA: 3'- -GGCUCG-------------GCGCCG-----AGCcCGCGu---CGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 130680 | 0.66 | 0.553917 |
Target: 5'- gCGGGgCGCGGCgcaggaugucCGGGgGCccgacggGGCGGCc -3' miRNA: 3'- gGCUCgGCGCCGa---------GCCCgCG-------UCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 36036 | 0.66 | 0.553917 |
Target: 5'- cCCGGcGCCGCGGCUCcuccGGCGaggaucuccucuuCGGCccgGGCg -3' miRNA: 3'- -GGCU-CGGCGCCGAGc---CCGC-------------GUCG---CUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 1801 | 0.66 | 0.554866 |
Target: 5'- aCCGGGCCGgGGaggCaGGCGcCGGgGAg -3' miRNA: 3'- -GGCUCGGCgCCga-GcCCGC-GUCgCUg -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 56328 | 0.66 | 0.554866 |
Target: 5'- cCUGGGCCgGUGGCU-GGaGCGCGcGCG-Cg -3' miRNA: 3'- -GGCUCGG-CGCCGAgCC-CGCGU-CGCuG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 33934 | 0.66 | 0.554866 |
Target: 5'- aUCGAGgcCCGCgcgccccgggGGCUCGGG-GCGG-GACg -3' miRNA: 3'- -GGCUC--GGCG----------CCGAGCCCgCGUCgCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 103993 | 0.66 | 0.554866 |
Target: 5'- gCG-GCCGUGGCggcCGuggaGGCGCGccgcGCGGCg -3' miRNA: 3'- gGCuCGGCGCCGa--GC----CCGCGU----CGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 126081 | 0.66 | 0.554866 |
Target: 5'- -gGGGCCGUGauCUCGGcCGuCGGCGGCa -3' miRNA: 3'- ggCUCGGCGCc-GAGCCcGC-GUCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 106790 | 0.66 | 0.554866 |
Target: 5'- aCCuGGCCGCGGCggcggugcucgUCGGGgcccCGCuGGUGAUc -3' miRNA: 3'- -GGcUCGGCGCCG-----------AGCCC----GCG-UCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 116316 | 0.66 | 0.554866 |
Target: 5'- cCCGAugacGCCGCGcucGCgCGGGCccGCGGCGu- -3' miRNA: 3'- -GGCU----CGGCGC---CGaGCCCG--CGUCGCug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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