miRNA display CGI


Results 101 - 120 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 119450 0.66 0.525694
Target:  5'- gUGGGCCGCGGCgacgUGGacgccguGCGCuacGUGGCc -3'
miRNA:   3'- gGCUCGGCGCCGa---GCC-------CGCGu--CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 113864 0.66 0.525694
Target:  5'- uUGAGCgacgGCGGCUCcugcGGCGCAagucgucggccgcGCGGCg -3'
miRNA:   3'- gGCUCGg---CGCCGAGc---CCGCGU-------------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 113078 0.66 0.523831
Target:  5'- aCGAGCgCGCGGCcgUCgccgccgccaccggGGGCGgGGCcGCg -3'
miRNA:   3'- gGCUCG-GCGCCG--AG--------------CCCGCgUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 104269 0.66 0.523831
Target:  5'- gCCGGcGCgGCGGCgggcccgccgcugcaGGcGCuGCAGCGGCu -3'
miRNA:   3'- -GGCU-CGgCGCCGag-------------CC-CG-CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 100049 0.66 0.517331
Target:  5'- aCGAGCUGCacgGGgUCGuGCGC-GCGGCc -3'
miRNA:   3'- gGCUCGGCG---CCgAGCcCGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 75246 0.66 0.52756
Target:  5'- gCCGAaggcgcacugcaccuCCGCgGGCUCcuGGCGCAGCGcCg -3'
miRNA:   3'- -GGCUc--------------GGCG-CCGAGc-CCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 93567 0.66 0.535046
Target:  5'- ---cGCCGCGGgggCGGGCGCgccaaagAGCGGg -3'
miRNA:   3'- ggcuCGGCGCCga-GCCCGCG-------UCGCUg -5'
29409 3' -64.1 NC_006151.1 + 8247 0.66 0.545399
Target:  5'- -aGGGCCG-GGC-CGGcGCGCcGgGACg -3'
miRNA:   3'- ggCUCGGCgCCGaGCC-CGCGuCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 90102 0.66 0.542569
Target:  5'- gCCGcaGGCCGCGGCgaCGcccaugacgaggcaGGCGgGGCGGu -3'
miRNA:   3'- -GGC--UCGGCGCCGa-GC--------------CCGCgUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 81777 0.66 0.542569
Target:  5'- aCCGGGaCGC-GCUCGGcGCGCccgucgaagagcccGGCGAa -3'
miRNA:   3'- -GGCUCgGCGcCGAGCC-CGCG--------------UCGCUg -5'
29409 3' -64.1 NC_006151.1 + 138198 0.66 0.539743
Target:  5'- cCCGuGCUGCGGCaccUcgacgcgcacuucaaCGGGCGC-GCGcACg -3'
miRNA:   3'- -GGCuCGGCGCCG---A---------------GCCCGCGuCGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 141993 0.66 0.535984
Target:  5'- cCCGGGaaaaagagCGCGGCgUgGGGCgGguGUGGCa -3'
miRNA:   3'- -GGCUCg-------GCGCCG-AgCCCG-CguCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 135863 0.66 0.535984
Target:  5'- aCCGGGCaCGUGGCcagCGucCGCGuGCGGCc -3'
miRNA:   3'- -GGCUCG-GCGCCGa--GCccGCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 66069 0.66 0.535984
Target:  5'- cCCGcggacGGCCGCcugGGCUuccacgCGGGCcuGCAGCGcGCg -3'
miRNA:   3'- -GGC-----UCGGCG---CCGA------GCCCG--CGUCGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 108762 0.66 0.535984
Target:  5'- gCGAGCCGUGGagaucaacCUCGGGacaucucccCGCGGCcccaguGGCg -3'
miRNA:   3'- gGCUCGGCGCC--------GAGCCC---------GCGUCG------CUG- -5'
29409 3' -64.1 NC_006151.1 + 102676 0.66 0.535984
Target:  5'- uUGAcGCCGUGGacgCGGGgGCgcccggcgcgGGCGGCg -3'
miRNA:   3'- gGCU-CGGCGCCga-GCCCgCG----------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 57238 0.66 0.535984
Target:  5'- gCGGcGCgCGCGGcCUCGGcguccGCGCGGCccucGACg -3'
miRNA:   3'- gGCU-CG-GCGCC-GAGCC-----CGCGUCG----CUG- -5'
29409 3' -64.1 NC_006151.1 + 15680 0.66 0.535984
Target:  5'- cCCGAGgaCgGCucggacggagagGGCUCGGGCuCGGaCGACg -3'
miRNA:   3'- -GGCUC--GgCG------------CCGAGCCCGcGUC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 6228 0.66 0.535984
Target:  5'- -gGAGCCGCGGCgcCGGGaGCccuGGCuGCc -3'
miRNA:   3'- ggCUCGGCGCCGa-GCCCgCG---UCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 2204 0.66 0.535984
Target:  5'- gCGGGCCgGUGGgUCuccacGGCGCccccGGCGGCg -3'
miRNA:   3'- gGCUCGG-CGCCgAGc----CCGCG----UCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.