Results 81 - 100 of 399 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 6228 | 0.66 | 0.535984 |
Target: 5'- -gGAGCCGCGGCgcCGGGaGCccuGGCuGCc -3' miRNA: 3'- ggCUCGGCGCCGa-GCCCgCG---UCGcUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 2204 | 0.66 | 0.535984 |
Target: 5'- gCGGGCCgGUGGgUCuccacGGCGCccccGGCGGCg -3' miRNA: 3'- gGCUCGG-CGCCgAGc----CCGCG----UCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 93567 | 0.66 | 0.535046 |
Target: 5'- ---cGCCGCGGgggCGGGCGCgccaaagAGCGGg -3' miRNA: 3'- ggcuCGGCGCCga-GCCCGCG-------UCGCUg -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 75246 | 0.66 | 0.52756 |
Target: 5'- gCCGAaggcgcacugcaccuCCGCgGGCUCcuGGCGCAGCGcCg -3' miRNA: 3'- -GGCUc--------------GGCG-CCGAGc-CCGCGUCGCuG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 91547 | 0.66 | 0.526627 |
Target: 5'- gCGAGgugCGCGGCcagCgGGGCGaUGGCGGCg -3' miRNA: 3'- gGCUCg--GCGCCGa--G-CCCGC-GUCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 83120 | 0.66 | 0.526627 |
Target: 5'- gCCG-GUCGCaGaGCUCGGGCGCcuuguacGCGcCa -3' miRNA: 3'- -GGCuCGGCG-C-CGAGCCCGCGu------CGCuG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 21516 | 0.66 | 0.526627 |
Target: 5'- aCCGGGgCG-GGCUCGGGCuuCGGcCGGg -3' miRNA: 3'- -GGCUCgGCgCCGAGCCCGc-GUC-GCUg -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 108762 | 0.66 | 0.535984 |
Target: 5'- gCGAGCCGUGGagaucaacCUCGGGacaucucccCGCGGCcccaguGGCg -3' miRNA: 3'- gGCUCGGCGCC--------GAGCCC---------GCGUCG------CUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 66069 | 0.66 | 0.535984 |
Target: 5'- cCCGcggacGGCCGCcugGGCUuccacgCGGGCcuGCAGCGcGCg -3' miRNA: 3'- -GGC-----UCGGCG---CCGA------GCCCG--CGUCGC-UG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 135863 | 0.66 | 0.535984 |
Target: 5'- aCCGGGCaCGUGGCcagCGucCGCGuGCGGCc -3' miRNA: 3'- -GGCUCG-GCGCCGa--GCccGCGU-CGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 82421 | 0.66 | 0.545399 |
Target: 5'- cCCGAGaggCGCgGGCgcucgcgCGGGCGCuGC-ACa -3' miRNA: 3'- -GGCUCg--GCG-CCGa------GCCCGCGuCGcUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 31237 | 0.66 | 0.545399 |
Target: 5'- gCCG-GCC-CGGCgagcgagCGGGCG-GGCGAg -3' miRNA: 3'- -GGCuCGGcGCCGa------GCCCGCgUCGCUg -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 27622 | 0.66 | 0.545399 |
Target: 5'- cCCGAGCC-CGGCcgccccgaCGGGUgGgGGUGGCu -3' miRNA: 3'- -GGCUCGGcGCCGa-------GCCCG-CgUCGCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 11312 | 0.66 | 0.545399 |
Target: 5'- cCCGGGCCGCcGCgauaccgcgCGGGCGauaccgcGCGGg -3' miRNA: 3'- -GGCUCGGCGcCGa--------GCCCGCgu-----CGCUg -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 134236 | 0.66 | 0.545399 |
Target: 5'- aCGGGaUCGUGGacgCGGGCuuucGCGGCGAg -3' miRNA: 3'- gGCUC-GGCGCCga-GCCCG----CGUCGCUg -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 8247 | 0.66 | 0.545399 |
Target: 5'- -aGGGCCG-GGC-CGGcGCGCcGgGACg -3' miRNA: 3'- ggCUCGGCgCCGaGCC-CGCGuCgCUG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 90102 | 0.66 | 0.542569 |
Target: 5'- gCCGcaGGCCGCGGCgaCGcccaugacgaggcaGGCGgGGCGGu -3' miRNA: 3'- -GGC--UCGGCGCCGa-GC--------------CCGCgUCGCUg -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 81777 | 0.66 | 0.542569 |
Target: 5'- aCCGGGaCGC-GCUCGGcGCGCccgucgaagagcccGGCGAa -3' miRNA: 3'- -GGCUCgGCGcCGAGCC-CGCG--------------UCGCUg -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 138198 | 0.66 | 0.539743 |
Target: 5'- cCCGuGCUGCGGCaccUcgacgcgcacuucaaCGGGCGC-GCGcACg -3' miRNA: 3'- -GGCuCGGCGCCG---A---------------GCCCGCGuCGC-UG- -5' |
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29409 | 3' | -64.1 | NC_006151.1 | + | 141993 | 0.66 | 0.535984 |
Target: 5'- cCCGGGaaaaagagCGCGGCgUgGGGCgGguGUGGCa -3' miRNA: 3'- -GGCUCg-------GCGCCG-AgCCCG-CguCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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