miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29410 3' -53.7 NC_006151.1 + 106209 0.66 0.952233
Target:  5'- --uGCGGCUCGCCcuccccGACcugAUgGUGGcCGCg -3'
miRNA:   3'- cuuCGUCGAGUGG------CUG---UAgUACC-GCG- -5'
29410 3' -53.7 NC_006151.1 + 81511 0.66 0.952233
Target:  5'- aGAGCgcggcccgcgugAGCUCGgCGGCcgCGgcGGCGCg -3'
miRNA:   3'- cUUCG------------UCGAGUgGCUGuaGUa-CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 75588 0.66 0.947956
Target:  5'- cAGGCGG-UCGCCGACGaCGacgaggucGGCGCg -3'
miRNA:   3'- cUUCGUCgAGUGGCUGUaGUa-------CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 50020 0.66 0.947956
Target:  5'- --cGCGGCcCGCgCGGCGcccCcgGGCGCg -3'
miRNA:   3'- cuuCGUCGaGUG-GCUGUa--GuaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 105513 0.66 0.947956
Target:  5'- --cGCgAGCUCgACCG-CAUgGcGGCGCg -3'
miRNA:   3'- cuuCG-UCGAG-UGGCuGUAgUaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 121432 0.66 0.947956
Target:  5'- --cGgGGCUCgcGCCGGCcUCGcUGGUGCc -3'
miRNA:   3'- cuuCgUCGAG--UGGCUGuAGU-ACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 122924 0.66 0.947956
Target:  5'- aGGGCGGCgacgacgcggaCGCCGACGgcggcgccgCGgggGGCGCg -3'
miRNA:   3'- cUUCGUCGa----------GUGGCUGUa--------GUa--CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 130282 0.66 0.947956
Target:  5'- cGAGGCcgcgGGCgcgCGCCGGCcgac-GGCGCg -3'
miRNA:   3'- -CUUCG----UCGa--GUGGCUGuaguaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 102524 0.66 0.947956
Target:  5'- -cGGCGGCgUCuacgACCaGACgGUgGUGGCGCg -3'
miRNA:   3'- cuUCGUCG-AG----UGG-CUG-UAgUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 103144 0.66 0.943432
Target:  5'- cAAGCGcGcCUCgGCCGACGcCGaccUGGCGCg -3'
miRNA:   3'- cUUCGU-C-GAG-UGGCUGUaGU---ACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 103887 0.66 0.943432
Target:  5'- cGAGGCGcGC-CACCuGGCGcuggagGUGGCGCg -3'
miRNA:   3'- -CUUCGU-CGaGUGG-CUGUag----UACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 129057 0.66 0.943432
Target:  5'- --uGCGGCUCcgccgagcacGCCGugAUCAcggacucgggGGCGUa -3'
miRNA:   3'- cuuCGUCGAG----------UGGCugUAGUa---------CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 132069 0.66 0.943432
Target:  5'- -cGGCGGCUCcUCGACcagGUC--GGCGCc -3'
miRNA:   3'- cuUCGUCGAGuGGCUG---UAGuaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 72320 0.66 0.943432
Target:  5'- cGAAGC-GC-CGCCGGuCAgcCAUGGcCGCg -3'
miRNA:   3'- -CUUCGuCGaGUGGCU-GUa-GUACC-GCG- -5'
29410 3' -53.7 NC_006151.1 + 87149 0.66 0.942966
Target:  5'- -cAGCAGCUCcgcuacCCGACGcCGUacuacgcgcccgcGGCGCc -3'
miRNA:   3'- cuUCGUCGAGu-----GGCUGUaGUA-------------CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 105945 0.66 0.93866
Target:  5'- --cGCcGCUCACCGAgGggcUCAUGGagacgGCg -3'
miRNA:   3'- cuuCGuCGAGUGGCUgU---AGUACCg----CG- -5'
29410 3' -53.7 NC_006151.1 + 90003 0.66 0.93866
Target:  5'- cAGGCuGCg-GgCGACGuuguUCGUGGCGCa -3'
miRNA:   3'- cUUCGuCGagUgGCUGU----AGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 81823 0.66 0.93866
Target:  5'- cGggGCAGCcggC-CCGcGCAUgAgcaGGCGCg -3'
miRNA:   3'- -CuuCGUCGa--GuGGC-UGUAgUa--CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 55518 0.66 0.93866
Target:  5'- -cGGCcacgAGgUCAUCGACAUCAcGcGCGCc -3'
miRNA:   3'- cuUCG----UCgAGUGGCUGUAGUaC-CGCG- -5'
29410 3' -53.7 NC_006151.1 + 19035 0.66 0.93866
Target:  5'- uGAAGCuGCaCGCCGGgucCA-CcgGGCGCa -3'
miRNA:   3'- -CUUCGuCGaGUGGCU---GUaGuaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.