miRNA display CGI


Results 21 - 40 of 130 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29410 5' -62.1 NC_006151.1 + 53512 0.66 0.64125
Target:  5'- -gGUGcuccgCCGCGCgCCCCgugagccgcuccagGGCGCGCa-- -3'
miRNA:   3'- cgCACa----GGUGCG-GGGG--------------CCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 53978 0.66 0.64125
Target:  5'- gGCGccUCCGCgggcgucgcggcgaGCUCCCGGaCGCGCUc- -3'
miRNA:   3'- -CGCacAGGUG--------------CGGGGGCC-GCGCGAac -5'
29410 5' -62.1 NC_006151.1 + 69646 0.66 0.64125
Target:  5'- cGCGUG-CgGCGCCgCCGGgucgucgaagccccCGCGCg-- -3'
miRNA:   3'- -CGCACaGgUGCGGgGGCC--------------GCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 106670 0.66 0.634375
Target:  5'- cGCGaggCCGCGgCgCUCGGCGCGCc-- -3'
miRNA:   3'- -CGCacaGGUGCgG-GGGCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 137646 0.66 0.634375
Target:  5'- ---cGUCCGCGCCCCCgucccGGCggacgaGCGCc-- -3'
miRNA:   3'- cgcaCAGGUGCGGGGG-----CCG------CGCGaac -5'
29410 5' -62.1 NC_006151.1 + 90608 0.66 0.633392
Target:  5'- gGCGUGgCCcccuucccccgagGCGgCCCgCGG-GCGCUUGg -3'
miRNA:   3'- -CGCACaGG-------------UGCgGGG-GCCgCGCGAAC- -5'
29410 5' -62.1 NC_006151.1 + 17603 0.66 0.633392
Target:  5'- aGCGUGaCCACGgugauggccgucaCCCCCauGGCGCGa--- -3'
miRNA:   3'- -CGCACaGGUGC-------------GGGGG--CCGCGCgaac -5'
29410 5' -62.1 NC_006151.1 + 8826 0.66 0.624552
Target:  5'- cGUGUGUgCGCGCgccucuCCCCGuGCGUGUc-- -3'
miRNA:   3'- -CGCACAgGUGCG------GGGGC-CGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 90051 0.66 0.624552
Target:  5'- gGCGaUG-CCgagGCGCgCCUCGGUGCGCa-- -3'
miRNA:   3'- -CGC-ACaGG---UGCG-GGGGCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 94262 0.66 0.624552
Target:  5'- cGCGg--CCACGUCCuuGGCGuCGUc-- -3'
miRNA:   3'- -CGCacaGGUGCGGGggCCGC-GCGaac -5'
29410 5' -62.1 NC_006151.1 + 102559 0.66 0.624552
Target:  5'- cGCGggcccUGUUugCGCGCgCCCGcGCGCGCg-- -3'
miRNA:   3'- -CGC-----ACAG--GUGCGgGGGC-CGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 112840 0.66 0.624552
Target:  5'- cGCGUGcUCACGCUCgUGGaCGUGCa-- -3'
miRNA:   3'- -CGCACaGGUGCGGGgGCC-GCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 117633 0.66 0.62357
Target:  5'- aGCGUGcCCACGUgcacgccgcgcugCUCCGGgGCGUc-- -3'
miRNA:   3'- -CGCACaGGUGCG-------------GGGGCCgCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 138129 0.66 0.61866
Target:  5'- cGCGg--CCugGCCguggacgcggaggaCCGGCGCGCg-- -3'
miRNA:   3'- -CGCacaGGugCGGg-------------GGCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 50074 0.66 0.614734
Target:  5'- cUGUG-CCGCagaGCCCaCgCGGCGCGCg-- -3'
miRNA:   3'- cGCACaGGUG---CGGG-G-GCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 19258 0.66 0.614734
Target:  5'- cGCGUGgaagCgGgGCUCgUGGCGCGCg-- -3'
miRNA:   3'- -CGCACa---GgUgCGGGgGCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 73967 0.66 0.614734
Target:  5'- cGCGUGgccaccguggCCAUGCCCgcguCCGGCGC-Ca-- -3'
miRNA:   3'- -CGCACa---------GGUGCGGG----GGCCGCGcGaac -5'
29410 5' -62.1 NC_006151.1 + 104410 0.66 0.614734
Target:  5'- gGCGUGcuggcCCGCGCCgccgCCGGCaugggGCGCUUc -3'
miRNA:   3'- -CGCACa----GGUGCGGg---GGCCG-----CGCGAAc -5'
29410 5' -62.1 NC_006151.1 + 83449 0.66 0.613753
Target:  5'- aGCGUGgccgCCAgGCCCacgaaggCCGcCGCGCUg- -3'
miRNA:   3'- -CGCACa---GGUgCGGG-------GGCcGCGCGAac -5'
29410 5' -62.1 NC_006151.1 + 137710 0.66 0.611791
Target:  5'- cGCGUGUgCACGCCCUgccgucgccguacgCGGUggccgGCGCc-- -3'
miRNA:   3'- -CGCACAgGUGCGGGG--------------GCCG-----CGCGaac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.