miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 3' -60.7 NC_006151.1 + 65941 0.67 0.620113
Target:  5'- cCGGCCcaGUCCucGUCgagcGCGGCCgCGUCg -3'
miRNA:   3'- -GCCGGcgUAGG--UAGa---CGUCGGgGCAG- -5'
29411 3' -60.7 NC_006151.1 + 60656 0.67 0.600109
Target:  5'- cCGcGCCGCGUCCucgcucccGUC-GCcGCCgCCGUCc -3'
miRNA:   3'- -GC-CGGCGUAGG--------UAGaCGuCGG-GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 132868 0.67 0.590138
Target:  5'- gGGCCGCGcCCccCaGCagGGCCUCGUCg -3'
miRNA:   3'- gCCGGCGUaGGuaGaCG--UCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 120751 0.67 0.586157
Target:  5'- cCGGCCGCGUCauggccugggUGCGGCgCCCGc- -3'
miRNA:   3'- -GCCGGCGUAGguag------ACGUCG-GGGCag -5'
29411 3' -60.7 NC_006151.1 + 59443 0.67 0.620113
Target:  5'- uCGGCCGCcgCCGccgCgaccGCGGCCgaGUCc -3'
miRNA:   3'- -GCCGGCGuaGGUa--Ga---CGUCGGggCAG- -5'
29411 3' -60.7 NC_006151.1 + 49955 0.67 0.640152
Target:  5'- uGGCCGCggCCcuggCcgGCcuCCCCGUCg -3'
miRNA:   3'- gCCGGCGuaGGua--Ga-CGucGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 70208 0.66 0.680094
Target:  5'- uGGCgauguggGCGUCCAUC-GCGGCgCCGcUCa -3'
miRNA:   3'- gCCGg------CGUAGGUAGaCGUCGgGGC-AG- -5'
29411 3' -60.7 NC_006151.1 + 57613 0.66 0.680094
Target:  5'- uCGGCCGCggCCGccUCgacgGCgcgcgAGaCCCCGUUg -3'
miRNA:   3'- -GCCGGCGuaGGU--AGa---CG-----UC-GGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 69631 0.66 0.680094
Target:  5'- gCGGUCgGCGUCCcgCgcgUGCGGCgCCGcCg -3'
miRNA:   3'- -GCCGG-CGUAGGuaG---ACGUCGgGGCaG- -5'
29411 3' -60.7 NC_006151.1 + 71333 0.66 0.680094
Target:  5'- gCGGCUGCG-CCGacgaccUCgccGUGGCCCuCGUCa -3'
miRNA:   3'- -GCCGGCGUaGGU------AGa--CGUCGGG-GCAG- -5'
29411 3' -60.7 NC_006151.1 + 68164 0.66 0.690005
Target:  5'- aCGGCCGCcaCCAgcgCguagGCGGCgUCGUUg -3'
miRNA:   3'- -GCCGGCGuaGGUa--Ga---CGUCGgGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 115227 0.66 0.690005
Target:  5'- uGGCCGCugccgCCGaga-CGGCCUCGUCg -3'
miRNA:   3'- gCCGGCGua---GGUagacGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 109757 0.66 0.660166
Target:  5'- uGGCCGCcgCCGUUggaGGCgCCCG-Ca -3'
miRNA:   3'- gCCGGCGuaGGUAGacgUCG-GGGCaG- -5'
29411 3' -60.7 NC_006151.1 + 123824 0.66 0.660166
Target:  5'- uGGCCuGC-UCCAcaccacgCUGCAGCUgcgcggggcgCCGUCg -3'
miRNA:   3'- gCCGG-CGuAGGUa------GACGUCGG----------GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 39941 0.66 0.660166
Target:  5'- aGGCCGC--CCcgCUGguGCUgaccccgggcgCCGUCg -3'
miRNA:   3'- gCCGGCGuaGGuaGACguCGG-----------GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 109521 0.66 0.650166
Target:  5'- -cGCCGCAgCCGUCUcaGCAGCgcccCCCGg- -3'
miRNA:   3'- gcCGGCGUaGGUAGA--CGUCG----GGGCag -5'
29411 3' -60.7 NC_006151.1 + 87340 0.66 0.650166
Target:  5'- gGGCCugccggGCcUCCAgggcCUgGCGGcCCCCGUCg -3'
miRNA:   3'- gCCGG------CGuAGGUa---GA-CGUC-GGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 64536 0.66 0.650166
Target:  5'- gCGGCCGCGUCgGgg-GCGGCgaggCCGUg -3'
miRNA:   3'- -GCCGGCGUAGgUagaCGUCGg---GGCAg -5'
29411 3' -60.7 NC_006151.1 + 31207 0.66 0.650166
Target:  5'- uGGcCCGCGUCCAg--GCcgGGCCCCc-- -3'
miRNA:   3'- gCC-GGCGUAGGUagaCG--UCGGGGcag -5'
29411 3' -60.7 NC_006151.1 + 16887 0.66 0.650166
Target:  5'- gCGcGCuCGCGUCCGUUgccGCGcccGCCCCGg- -3'
miRNA:   3'- -GC-CG-GCGUAGGUAGa--CGU---CGGGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.