miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 3' -60.7 NC_006151.1 + 57526 0.69 0.511926
Target:  5'- gCGGCCGCcUCCGgc-GCGGCCgcgggcaCGUCg -3'
miRNA:   3'- -GCCGGCGuAGGUagaCGUCGGg------GCAG- -5'
29411 3' -60.7 NC_006151.1 + 104307 0.69 0.506218
Target:  5'- gCGGCUGaCGUggcucgacgacuacgCCGUC-GCGGCgCCCGUCa -3'
miRNA:   3'- -GCCGGC-GUA---------------GGUAGaCGUCG-GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 4939 0.69 0.502428
Target:  5'- gCGGCC-CGUCgGUCgGCGGgggCCCGUCg -3'
miRNA:   3'- -GCCGGcGUAGgUAGaCGUCg--GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 32039 0.69 0.502428
Target:  5'- --uCCGCGUCCGcagccgccUCUGCAGCCgCCGcCc -3'
miRNA:   3'- gccGGCGUAGGU--------AGACGUCGG-GGCaG- -5'
29411 3' -60.7 NC_006151.1 + 62383 0.69 0.493007
Target:  5'- gGGaCGCGcgCCGUCcugGCGGUCCUGUCg -3'
miRNA:   3'- gCCgGCGUa-GGUAGa--CGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 63796 0.69 0.493007
Target:  5'- uCGGCCGUcgCCAgcgcCUcGCcgGGCCCCGg- -3'
miRNA:   3'- -GCCGGCGuaGGUa---GA-CG--UCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 39846 0.69 0.493007
Target:  5'- gCGGCCGCcggggccucgCCGagcUCcGCGGCCCCGa- -3'
miRNA:   3'- -GCCGGCGua--------GGU---AGaCGUCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 109248 0.69 0.493007
Target:  5'- -cGCCGCGgucUCCG-CUgGCGGCCCCGa- -3'
miRNA:   3'- gcCGGCGU---AGGUaGA-CGUCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 77181 0.69 0.483668
Target:  5'- -cGCCGCGUCCAcgUCcGCcGCCgCGUCc -3'
miRNA:   3'- gcCGGCGUAGGU--AGaCGuCGGgGCAG- -5'
29411 3' -60.7 NC_006151.1 + 58764 0.69 0.474415
Target:  5'- gCGGCCGCcgagcCCGUCcacgGC-GCCgCCGUCa -3'
miRNA:   3'- -GCCGGCGua---GGUAGa---CGuCGG-GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 82067 0.69 0.473494
Target:  5'- gCGGCCacgucgcGCAU-CGUCUGgugcaUGGCCCCGUCg -3'
miRNA:   3'- -GCCGG-------CGUAgGUAGAC-----GUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 119060 0.7 0.465251
Target:  5'- gCGGCCGCcUCCGcggGC-GCgCCCGUCu -3'
miRNA:   3'- -GCCGGCGuAGGUagaCGuCG-GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 38152 0.7 0.465251
Target:  5'- aGGCCGCGgac-UCUGUcGCCCuCGUCg -3'
miRNA:   3'- gCCGGCGUagguAGACGuCGGG-GCAG- -5'
29411 3' -60.7 NC_006151.1 + 11992 0.7 0.465251
Target:  5'- cCGcGCCGCu---GUCUGUGGCgCCCGUCg -3'
miRNA:   3'- -GC-CGGCGuaggUAGACGUCG-GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 58609 0.7 0.45618
Target:  5'- uGGCCGgGUCCGUCUcgaagcGCAGCggCUCGUa -3'
miRNA:   3'- gCCGGCgUAGGUAGA------CGUCG--GGGCAg -5'
29411 3' -60.7 NC_006151.1 + 4021 0.7 0.436567
Target:  5'- gGGCCGCggcguagGUCCAggcggccUCgcggGCgcgGGCCCCGUCc -3'
miRNA:   3'- gCCGGCG-------UAGGU-------AGa---CG---UCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 108108 0.7 0.429555
Target:  5'- gCGGCCGCgcagGUCCcccCU-CAGcCCCCGUCg -3'
miRNA:   3'- -GCCGGCG----UAGGua-GAcGUC-GGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 90893 0.7 0.420886
Target:  5'- cCGGcCCGCAgCCG-CUGCAGCagCGUCa -3'
miRNA:   3'- -GCC-GGCGUaGGUaGACGUCGggGCAG- -5'
29411 3' -60.7 NC_006151.1 + 78178 0.7 0.420886
Target:  5'- aGGCCGUGUCCgccGUCgcgGCGGaCCCCuUCu -3'
miRNA:   3'- gCCGGCGUAGG---UAGa--CGUC-GGGGcAG- -5'
29411 3' -60.7 NC_006151.1 + 4663 0.71 0.409774
Target:  5'- gGGCCuGCAUCCGcggguUCUGCAGCCaggacauggccucgCCGg- -3'
miRNA:   3'- gCCGG-CGUAGGU-----AGACGUCGG--------------GGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.