miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 3' -60.7 NC_006151.1 + 62383 0.69 0.493007
Target:  5'- gGGaCGCGcgCCGUCcugGCGGUCCUGUCg -3'
miRNA:   3'- gCCgGCGUa-GGUAGa--CGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 63796 0.69 0.493007
Target:  5'- uCGGCCGUcgCCAgcgcCUcGCcgGGCCCCGg- -3'
miRNA:   3'- -GCCGGCGuaGGUa---GA-CG--UCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 64536 0.66 0.650166
Target:  5'- gCGGCCGCGUCgGgg-GCGGCgaggCCGUg -3'
miRNA:   3'- -GCCGGCGUAGgUagaCGUCGg---GGCAg -5'
29411 3' -60.7 NC_006151.1 + 65830 0.71 0.395523
Target:  5'- gCGGCCGCG-CCAgc-GCGGCCCgGcUCa -3'
miRNA:   3'- -GCCGGCGUaGGUagaCGUCGGGgC-AG- -5'
29411 3' -60.7 NC_006151.1 + 65941 0.67 0.620113
Target:  5'- cCGGCCcaGUCCucGUCgagcGCGGCCgCGUCg -3'
miRNA:   3'- -GCCGGcgUAGG--UAGa---CGUCGGgGCAG- -5'
29411 3' -60.7 NC_006151.1 + 67728 0.67 0.640152
Target:  5'- aCGGCgcggCGCAcaggCaCGgcgCgGCGGCCCCGUCg -3'
miRNA:   3'- -GCCG----GCGUa---G-GUa--GaCGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 68017 0.69 0.521498
Target:  5'- uCGGCgGCGUCCAggUCcagGCGGCCCg--- -3'
miRNA:   3'- -GCCGgCGUAGGU--AGa--CGUCGGGgcag -5'
29411 3' -60.7 NC_006151.1 + 68164 0.66 0.690005
Target:  5'- aCGGCCGCcaCCAgcgCguagGCGGCgUCGUUg -3'
miRNA:   3'- -GCCGGCGuaGGUa--Ga---CGUCGgGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 69631 0.66 0.680094
Target:  5'- gCGGUCgGCGUCCcgCgcgUGCGGCgCCGcCg -3'
miRNA:   3'- -GCCGG-CGUAGGuaG---ACGUCGgGGCaG- -5'
29411 3' -60.7 NC_006151.1 + 69708 0.68 0.550608
Target:  5'- uGGCCGCcgCCGgggGCAGCagCgCGUCg -3'
miRNA:   3'- gCCGGCGuaGGUagaCGUCGg-G-GCAG- -5'
29411 3' -60.7 NC_006151.1 + 70208 0.66 0.680094
Target:  5'- uGGCgauguggGCGUCCAUC-GCGGCgCCGcUCa -3'
miRNA:   3'- gCCGg------CGUAGGUAGaCGUCGgGGC-AG- -5'
29411 3' -60.7 NC_006151.1 + 71333 0.66 0.680094
Target:  5'- gCGGCUGCG-CCGacgaccUCgccGUGGCCCuCGUCa -3'
miRNA:   3'- -GCCGGCGUaGGU------AGa--CGUCGGG-GCAG- -5'
29411 3' -60.7 NC_006151.1 + 74651 0.66 0.680094
Target:  5'- aCGGCgGCgcaGUCC-UCggGCAGCucCCCGUUg -3'
miRNA:   3'- -GCCGgCG---UAGGuAGa-CGUCG--GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 75835 0.67 0.610103
Target:  5'- cCGGCCGUggUCA-CaGCA-CCCCGUCg -3'
miRNA:   3'- -GCCGGCGuaGGUaGaCGUcGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 77181 0.69 0.483668
Target:  5'- -cGCCGCGUCCAcgUCcGCcGCCgCGUCc -3'
miRNA:   3'- gcCGGCGUAGGU--AGaCGuCGGgGCAG- -5'
29411 3' -60.7 NC_006151.1 + 78178 0.7 0.420886
Target:  5'- aGGCCGUGUCCgccGUCgcgGCGGaCCCCuUCu -3'
miRNA:   3'- gCCGGCGUAGG---UAGa--CGUC-GGGGcAG- -5'
29411 3' -60.7 NC_006151.1 + 82067 0.69 0.473494
Target:  5'- gCGGCCacgucgcGCAU-CGUCUGgugcaUGGCCCCGUCg -3'
miRNA:   3'- -GCCGG-------CGUAgGUAGAC-----GUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 83338 0.66 0.670145
Target:  5'- aGGCgCGCGUCCAcgUGCu-CCCCGg- -3'
miRNA:   3'- gCCG-GCGUAGGUagACGucGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 84322 0.71 0.371168
Target:  5'- uGGCCGCGaCCGUgcGCGGCCUCGcCg -3'
miRNA:   3'- gCCGGCGUaGGUAgaCGUCGGGGCaG- -5'
29411 3' -60.7 NC_006151.1 + 86824 0.71 0.387291
Target:  5'- cCGGCCcaguGCggCCAUg-GCAGCCCCGcCg -3'
miRNA:   3'- -GCCGG----CGuaGGUAgaCGUCGGGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.