Results 81 - 95 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 119060 | 0.7 | 0.465251 |
Target: 5'- gCGGCCGCcUCCGcggGC-GCgCCCGUCu -3' miRNA: 3'- -GCCGGCGuAGGUagaCGuCG-GGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 120751 | 0.67 | 0.586157 |
Target: 5'- cCGGCCGCGUCauggccugggUGCGGCgCCCGc- -3' miRNA: 3'- -GCCGGCGUAGguag------ACGUCG-GGGCag -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 120853 | 0.66 | 0.670145 |
Target: 5'- uGGCCacguacaCGUCCAgccacCUGCuccGCUCCGUCa -3' miRNA: 3'- gCCGGc------GUAGGUa----GACGu--CGGGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 123824 | 0.66 | 0.660166 |
Target: 5'- uGGCCuGC-UCCAcaccacgCUGCAGCUgcgcggggcgCCGUCg -3' miRNA: 3'- gCCGG-CGuAGGUa------GACGUCGG----------GGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 124101 | 0.67 | 0.630132 |
Target: 5'- gGGaCCGCuUCUacGUCUGCccGCCgCCGUCc -3' miRNA: 3'- gCC-GGCGuAGG--UAGACGu-CGG-GGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 127565 | 0.68 | 0.550608 |
Target: 5'- uGGCCGCcgCCGgcgccUCguucGCcGuCCCCGUCg -3' miRNA: 3'- gCCGGCGuaGGU-----AGa---CGuC-GGGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 128422 | 0.66 | 0.670145 |
Target: 5'- aGGCCGCAcacgccgcucuUCCAgggcgUCU-CGGCCCaCGUg -3' miRNA: 3'- gCCGGCGU-----------AGGU-----AGAcGUCGGG-GCAg -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 130903 | 0.68 | 0.550608 |
Target: 5'- gCGGCCGUcgCCGUCgucggugGCcgGGCCCgCGg- -3' miRNA: 3'- -GCCGGCGuaGGUAGa------CG--UCGGG-GCag -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 132868 | 0.67 | 0.590138 |
Target: 5'- gGGCCGCGcCCccCaGCagGGCCUCGUCg -3' miRNA: 3'- gCCGGCGUaGGuaGaCG--UCGGGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 133042 | 0.66 | 0.699871 |
Target: 5'- uGGCCGCcUCgAUCaggucCAGCCCC-UCg -3' miRNA: 3'- gCCGGCGuAGgUAGac---GUCGGGGcAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 133261 | 0.66 | 0.690005 |
Target: 5'- aCGGCCugucgcugaagGCGagCCGgcgGCGGCCCaCGUCg -3' miRNA: 3'- -GCCGG-----------CGUa-GGUagaCGUCGGG-GCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 135034 | 0.67 | 0.63915 |
Target: 5'- gGGCCGCgucGUCC-UCgggGCGGUCCCccuccucGUCu -3' miRNA: 3'- gCCGGCG---UAGGuAGa--CGUCGGGG-------CAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 135873 | 0.74 | 0.253195 |
Target: 5'- uGGCCaGCGUCCGcgUGCGGCCCguguuCGUCg -3' miRNA: 3'- gCCGG-CGUAGGUagACGUCGGG-----GCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 139463 | 0.66 | 0.689016 |
Target: 5'- -cGCCGCccgCCAcCUGCacaccgcGGCCCCGcUCg -3' miRNA: 3'- gcCGGCGua-GGUaGACG-------UCGGGGC-AG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 140049 | 0.66 | 0.690005 |
Target: 5'- gCGGCCGCAcgCCAcCgagGCGGCgCgCGUg -3' miRNA: 3'- -GCCGGCGUa-GGUaGa--CGUCGgG-GCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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