miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 3' -60.7 NC_006151.1 + 109521 0.66 0.650166
Target:  5'- -cGCCGCAgCCGUCUcaGCAGCgcccCCCGg- -3'
miRNA:   3'- gcCGGCGUaGGUAGA--CGUCG----GGGCag -5'
29411 3' -60.7 NC_006151.1 + 109421 0.67 0.620113
Target:  5'- cCGGCCGCA-CCA-CcGcCGGCCCCa-- -3'
miRNA:   3'- -GCCGGCGUaGGUaGaC-GUCGGGGcag -5'
29411 3' -60.7 NC_006151.1 + 109248 0.69 0.493007
Target:  5'- -cGCCGCGgucUCCG-CUgGCGGCCCCGa- -3'
miRNA:   3'- gcCGGCGU---AGGUaGA-CGUCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 108108 0.7 0.429555
Target:  5'- gCGGCCGCgcagGUCCcccCU-CAGcCCCCGUCg -3'
miRNA:   3'- -GCCGGCG----UAGGua-GAcGUC-GGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 107720 0.68 0.540844
Target:  5'- aGGCCGCcgcggcccCCAagCaGCAGCCCCGg- -3'
miRNA:   3'- gCCGGCGua------GGUa-GaCGUCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 104307 0.69 0.506218
Target:  5'- gCGGCUGaCGUggcucgacgacuacgCCGUC-GCGGCgCCCGUCa -3'
miRNA:   3'- -GCCGGC-GUA---------------GGUAGaCGUCG-GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 103805 0.68 0.580196
Target:  5'- aGGCCGCG-CUGUCgGCGGCCgUGg- -3'
miRNA:   3'- gCCGGCGUaGGUAGaCGUCGGgGCag -5'
29411 3' -60.7 NC_006151.1 + 100583 0.71 0.387291
Target:  5'- aGGCCGCcaCCGUcCUGCGG-CCCGUg -3'
miRNA:   3'- gCCGGCGuaGGUA-GACGUCgGGGCAg -5'
29411 3' -60.7 NC_006151.1 + 98715 0.66 0.670145
Target:  5'- aCGGCgCGCG-CgcUCgUGCAGCCCCGcuUCg -3'
miRNA:   3'- -GCCG-GCGUaGguAG-ACGUCGGGGC--AG- -5'
29411 3' -60.7 NC_006151.1 + 93059 0.68 0.531139
Target:  5'- gGGCCaC-UCCGUCcGCgGGCUCCGUCu -3'
miRNA:   3'- gCCGGcGuAGGUAGaCG-UCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 90999 0.73 0.297619
Target:  5'- uGGCgCGC-UCCAgcacgGCGGUCCCGUCg -3'
miRNA:   3'- gCCG-GCGuAGGUaga--CGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 90893 0.7 0.420886
Target:  5'- cCGGcCCGCAgCCG-CUGCAGCagCGUCa -3'
miRNA:   3'- -GCC-GGCGUaGGUaGACGUCGggGCAG- -5'
29411 3' -60.7 NC_006151.1 + 89696 0.68 0.580196
Target:  5'- aCGGCCGCcgcGUCCAggaacccgGCGGCgCCGg- -3'
miRNA:   3'- -GCCGGCG---UAGGUaga-----CGUCGgGGCag -5'
29411 3' -60.7 NC_006151.1 + 87521 0.67 0.610103
Target:  5'- cCGGCCGCGcCCGcCU-CGGCCCCc-- -3'
miRNA:   3'- -GCCGGCGUaGGUaGAcGUCGGGGcag -5'
29411 3' -60.7 NC_006151.1 + 87340 0.66 0.650166
Target:  5'- gGGCCugccggGCcUCCAgggcCUgGCGGcCCCCGUCg -3'
miRNA:   3'- gCCGG------CGuAGGUa---GA-CGUC-GGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 86824 0.71 0.387291
Target:  5'- cCGGCCcaguGCggCCAUg-GCAGCCCCGcCg -3'
miRNA:   3'- -GCCGG----CGuaGGUAgaCGUCGGGGCaG- -5'
29411 3' -60.7 NC_006151.1 + 84322 0.71 0.371168
Target:  5'- uGGCCGCGaCCGUgcGCGGCCUCGcCg -3'
miRNA:   3'- gCCGGCGUaGGUAgaCGUCGGGGCaG- -5'
29411 3' -60.7 NC_006151.1 + 83338 0.66 0.670145
Target:  5'- aGGCgCGCGUCCAcgUGCu-CCCCGg- -3'
miRNA:   3'- gCCG-GCGUAGGUagACGucGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 82067 0.69 0.473494
Target:  5'- gCGGCCacgucgcGCAU-CGUCUGgugcaUGGCCCCGUCg -3'
miRNA:   3'- -GCCGG-------CGUAgGUAGAC-----GUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 78178 0.7 0.420886
Target:  5'- aGGCCGUGUCCgccGUCgcgGCGGaCCCCuUCu -3'
miRNA:   3'- gCCGGCGUAGG---UAGa--CGUC-GGGGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.