Results 61 - 80 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 58609 | 0.7 | 0.45618 |
Target: 5'- uGGCCGgGUCCGUCUcgaagcGCAGCggCUCGUa -3' miRNA: 3'- gCCGGCgUAGGUAGA------CGUCG--GGGCAg -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 58265 | 0.66 | 0.680094 |
Target: 5'- gGGCCGCAgcaCCGUCUcGC-GCa-CGUCa -3' miRNA: 3'- gCCGGCGUa--GGUAGA-CGuCGggGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 57613 | 0.66 | 0.680094 |
Target: 5'- uCGGCCGCggCCGccUCgacgGCgcgcgAGaCCCCGUUg -3' miRNA: 3'- -GCCGGCGuaGGU--AGa---CG-----UC-GGGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 57526 | 0.69 | 0.511926 |
Target: 5'- gCGGCCGCcUCCGgc-GCGGCCgcgggcaCGUCg -3' miRNA: 3'- -GCCGGCGuAGGUagaCGUCGGg------GCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 57433 | 0.69 | 0.521498 |
Target: 5'- aGcGUCaCGUCCGUCgcgGCGGCCCCcgcGUCg -3' miRNA: 3'- gC-CGGcGUAGGUAGa--CGUCGGGG---CAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 57247 | 0.66 | 0.670145 |
Target: 5'- gCGGCCucgGCGUCCG-C-GCGGCCCuCGa- -3' miRNA: 3'- -GCCGG---CGUAGGUaGaCGUCGGG-GCag -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 53628 | 0.68 | 0.580196 |
Target: 5'- aGGUCGCG-CU-UCUGCAGCUcgcgcaCCGUCg -3' miRNA: 3'- gCCGGCGUaGGuAGACGUCGG------GGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 53412 | 0.66 | 0.696916 |
Target: 5'- aCGGCCGUGagCAggUGCcgcccgagcagcccGGCCUCGUCg -3' miRNA: 3'- -GCCGGCGUagGUagACG--------------UCGGGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 52073 | 0.75 | 0.219586 |
Target: 5'- gCGuGuaGCuGUCCGUCUGCAGCgCCGUCg -3' miRNA: 3'- -GC-CggCG-UAGGUAGACGUCGgGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 50856 | 0.68 | 0.570289 |
Target: 5'- gCGGCCGCccUCCcgCgccccCGGaCCCCGUCc -3' miRNA: 3'- -GCCGGCGu-AGGuaGac---GUC-GGGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 50718 | 0.76 | 0.20376 |
Target: 5'- aCGGCCGCcccggcgGUCCAgCUGCcccGGCCCCGg- -3' miRNA: 3'- -GCCGGCG-------UAGGUaGACG---UCGGGGCag -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 49955 | 0.67 | 0.640152 |
Target: 5'- uGGCCGCggCCcuggCcgGCcuCCCCGUCg -3' miRNA: 3'- gCCGGCGuaGGua--Ga-CGucGGGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 45906 | 0.67 | 0.630132 |
Target: 5'- uGGCUGCAUCCAgcgCUGgA-CCCUGa- -3' miRNA: 3'- gCCGGCGUAGGUa--GACgUcGGGGCag -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 44686 | 0.68 | 0.540844 |
Target: 5'- gCGGCCGgcggcugacCGUaCCAUCUGCuGCCCaugguGUCc -3' miRNA: 3'- -GCCGGC---------GUA-GGUAGACGuCGGGg----CAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 39941 | 0.66 | 0.660166 |
Target: 5'- aGGCCGC--CCcgCUGguGCUgaccccgggcgCCGUCg -3' miRNA: 3'- gCCGGCGuaGGuaGACguCGG-----------GGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 39846 | 0.69 | 0.493007 |
Target: 5'- gCGGCCGCcggggccucgCCGagcUCcGCGGCCCCGa- -3' miRNA: 3'- -GCCGGCGua--------GGU---AGaCGUCGGGGCag -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 39809 | 0.68 | 0.540844 |
Target: 5'- gGGCUcgGCGcCCcgCUGCGGC-CCGUCu -3' miRNA: 3'- gCCGG--CGUaGGuaGACGUCGgGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 38152 | 0.7 | 0.465251 |
Target: 5'- aGGCCGCGgac-UCUGUcGCCCuCGUCg -3' miRNA: 3'- gCCGGCGUagguAGACGuCGGG-GCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 37460 | 0.67 | 0.640152 |
Target: 5'- aGGCCGCggCCcgCUaccgcgccGCGGCcgggcccgugCCCGUCu -3' miRNA: 3'- gCCGGCGuaGGuaGA--------CGUCG----------GGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 37391 | 0.74 | 0.247313 |
Target: 5'- aCGGCCGCGUCCG-CUacgGCGGCgCCGg- -3' miRNA: 3'- -GCCGGCGUAGGUaGA---CGUCGgGGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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