Results 81 - 95 of 95 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 89696 | 0.68 | 0.580196 |
Target: 5'- aCGGCCGCcgcGUCCAggaacccgGCGGCgCCGg- -3' miRNA: 3'- -GCCGGCG---UAGGUaga-----CGUCGgGGCag -5' |
|||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 103805 | 0.68 | 0.580196 |
Target: 5'- aGGCCGCG-CUGUCgGCGGCCgUGg- -3' miRNA: 3'- gCCGGCGUaGGUAGaCGUCGGgGCag -5' |
|||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 109421 | 0.67 | 0.620113 |
Target: 5'- cCGGCCGCA-CCA-CcGcCGGCCCCa-- -3' miRNA: 3'- -GCCGGCGUaGGUaGaC-GUCGGGGcag -5' |
|||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 36384 | 0.67 | 0.630132 |
Target: 5'- aGGCCGgGgCCccCgGCGGCCCCGg- -3' miRNA: 3'- gCCGGCgUaGGuaGaCGUCGGGGCag -5' |
|||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 45906 | 0.67 | 0.630132 |
Target: 5'- uGGCUGCAUCCAgcgCUGgA-CCCUGa- -3' miRNA: 3'- gCCGGCGUAGGUa--GACgUcGGGGCag -5' |
|||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 87340 | 0.66 | 0.650166 |
Target: 5'- gGGCCugccggGCcUCCAgggcCUgGCGGcCCCCGUCg -3' miRNA: 3'- gCCGG------CGuAGGUa---GA-CGUC-GGGGCAG- -5' |
|||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 64536 | 0.66 | 0.650166 |
Target: 5'- gCGGCCGCGUCgGgg-GCGGCgaggCCGUg -3' miRNA: 3'- -GCCGGCGUAGgUagaCGUCGg---GGCAg -5' |
|||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 31207 | 0.66 | 0.650166 |
Target: 5'- uGGcCCGCGUCCAg--GCcgGGCCCCc-- -3' miRNA: 3'- gCC-GGCGUAGGUagaCG--UCGGGGcag -5' |
|||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 16887 | 0.66 | 0.650166 |
Target: 5'- gCGcGCuCGCGUCCGUUgccGCGcccGCCCCGg- -3' miRNA: 3'- -GC-CG-GCGUAGGUAGa--CGU---CGGGGCag -5' |
|||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 67728 | 0.67 | 0.640152 |
Target: 5'- aCGGCgcggCGCAcaggCaCGgcgCgGCGGCCCCGUCg -3' miRNA: 3'- -GCCG----GCGUa---G-GUa--GaCGUCGGGGCAG- -5' |
|||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 49955 | 0.67 | 0.640152 |
Target: 5'- uGGCCGCggCCcuggCcgGCcuCCCCGUCg -3' miRNA: 3'- gCCGGCGuaGGua--Ga-CGucGGGGCAG- -5' |
|||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 37460 | 0.67 | 0.640152 |
Target: 5'- aGGCCGCggCCcgCUaccgcgccGCGGCcgggcccgugCCCGUCu -3' miRNA: 3'- gCCGGCGuaGGuaGA--------CGUCG----------GGGCAG- -5' |
|||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 135034 | 0.67 | 0.63915 |
Target: 5'- gGGCCGCgucGUCC-UCgggGCGGUCCCccuccucGUCu -3' miRNA: 3'- gCCGGCG---UAGGuAGa--CGUCGGGG-------CAG- -5' |
|||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 124101 | 0.67 | 0.630132 |
Target: 5'- gGGaCCGCuUCUacGUCUGCccGCCgCCGUCc -3' miRNA: 3'- gCC-GGCGuAGG--UAGACGu-CGG-GGCAG- -5' |
|||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 53628 | 0.68 | 0.580196 |
Target: 5'- aGGUCGCG-CU-UCUGCAGCUcgcgcaCCGUCg -3' miRNA: 3'- gCCGGCGUaGGuAGACGUCGG------GGCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home