miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 3' -60.7 NC_006151.1 + 98715 0.66 0.670145
Target:  5'- aCGGCgCGCG-CgcUCgUGCAGCCCCGcuUCg -3'
miRNA:   3'- -GCCG-GCGUaGguAG-ACGUCGGGGC--AG- -5'
29411 3' -60.7 NC_006151.1 + 109757 0.66 0.660166
Target:  5'- uGGCCGCcgCCGUUggaGGCgCCCG-Ca -3'
miRNA:   3'- gCCGGCGuaGGUAGacgUCG-GGGCaG- -5'
29411 3' -60.7 NC_006151.1 + 123824 0.66 0.660166
Target:  5'- uGGCCuGC-UCCAcaccacgCUGCAGCUgcgcggggcgCCGUCg -3'
miRNA:   3'- gCCGG-CGuAGGUa------GACGUCGG----------GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 39941 0.66 0.660166
Target:  5'- aGGCCGC--CCcgCUGguGCUgaccccgggcgCCGUCg -3'
miRNA:   3'- gCCGGCGuaGGuaGACguCGG-----------GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 16887 0.66 0.650166
Target:  5'- gCGcGCuCGCGUCCGUUgccGCGcccGCCCCGg- -3'
miRNA:   3'- -GC-CG-GCGUAGGUAGa--CGU---CGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 31207 0.66 0.650166
Target:  5'- uGGcCCGCGUCCAg--GCcgGGCCCCc-- -3'
miRNA:   3'- gCC-GGCGUAGGUagaCG--UCGGGGcag -5'
29411 3' -60.7 NC_006151.1 + 64536 0.66 0.650166
Target:  5'- gCGGCCGCGUCgGgg-GCGGCgaggCCGUg -3'
miRNA:   3'- -GCCGGCGUAGgUagaCGUCGg---GGCAg -5'
29411 3' -60.7 NC_006151.1 + 87340 0.66 0.650166
Target:  5'- gGGCCugccggGCcUCCAgggcCUgGCGGcCCCCGUCg -3'
miRNA:   3'- gCCGG------CGuAGGUa---GA-CGUC-GGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 109521 0.66 0.650166
Target:  5'- -cGCCGCAgCCGUCUcaGCAGCgcccCCCGg- -3'
miRNA:   3'- gcCGGCGUaGGUAGA--CGUCG----GGGCag -5'
29411 3' -60.7 NC_006151.1 + 37460 0.67 0.640152
Target:  5'- aGGCCGCggCCcgCUaccgcgccGCGGCcgggcccgugCCCGUCu -3'
miRNA:   3'- gCCGGCGuaGGuaGA--------CGUCG----------GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 49955 0.67 0.640152
Target:  5'- uGGCCGCggCCcuggCcgGCcuCCCCGUCg -3'
miRNA:   3'- gCCGGCGuaGGua--Ga-CGucGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 67728 0.67 0.640152
Target:  5'- aCGGCgcggCGCAcaggCaCGgcgCgGCGGCCCCGUCg -3'
miRNA:   3'- -GCCG----GCGUa---G-GUa--GaCGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 135034 0.67 0.63915
Target:  5'- gGGCCGCgucGUCC-UCgggGCGGUCCCccuccucGUCu -3'
miRNA:   3'- gCCGGCG---UAGGuAGa--CGUCGGGG-------CAG- -5'
29411 3' -60.7 NC_006151.1 + 124101 0.67 0.630132
Target:  5'- gGGaCCGCuUCUacGUCUGCccGCCgCCGUCc -3'
miRNA:   3'- gCC-GGCGuAGG--UAGACGu-CGG-GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 45906 0.67 0.630132
Target:  5'- uGGCUGCAUCCAgcgCUGgA-CCCUGa- -3'
miRNA:   3'- gCCGGCGUAGGUa--GACgUcGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 36384 0.67 0.630132
Target:  5'- aGGCCGgGgCCccCgGCGGCCCCGg- -3'
miRNA:   3'- gCCGGCgUaGGuaGaCGUCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 59443 0.67 0.620113
Target:  5'- uCGGCCGCcgCCGccgCgaccGCGGCCgaGUCc -3'
miRNA:   3'- -GCCGGCGuaGGUa--Ga---CGUCGGggCAG- -5'
29411 3' -60.7 NC_006151.1 + 65941 0.67 0.620113
Target:  5'- cCGGCCcaGUCCucGUCgagcGCGGCCgCGUCg -3'
miRNA:   3'- -GCCGGcgUAGG--UAGa---CGUCGGgGCAG- -5'
29411 3' -60.7 NC_006151.1 + 109421 0.67 0.620113
Target:  5'- cCGGCCGCA-CCA-CcGcCGGCCCCa-- -3'
miRNA:   3'- -GCCGGCGUaGGUaGaC-GUCGGGGcag -5'
29411 3' -60.7 NC_006151.1 + 75835 0.67 0.610103
Target:  5'- cCGGCCGUggUCA-CaGCA-CCCCGUCg -3'
miRNA:   3'- -GCCGGCGuaGGUaGaCGUcGGGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.