miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 5' -58.1 NC_006151.1 + 30898 0.67 0.755979
Target:  5'- cGAG-CGGAGCGcGcgGUagcgcCCGCGGGCGg -3'
miRNA:   3'- -CUCgGCCUCGUcUuaCA-----GGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 19024 0.67 0.754064
Target:  5'- -cGCCGGcgAGguGAAgcugcacgccggGUCCAcCGGGCGc -3'
miRNA:   3'- cuCGGCC--UCguCUUa-----------CAGGU-GCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 27458 0.67 0.746359
Target:  5'- uGGGUCGGgGGCGGGcgGUCgaGCGGGgGg -3'
miRNA:   3'- -CUCGGCC-UCGUCUuaCAGg-UGCCCgU- -5'
29411 5' -58.1 NC_006151.1 + 41507 0.67 0.746359
Target:  5'- gGAGCCaauGGGGCGGGcg--CCGCGGaGCGg -3'
miRNA:   3'- -CUCGG---CCUCGUCUuacaGGUGCC-CGU- -5'
29411 5' -58.1 NC_006151.1 + 135085 0.67 0.746359
Target:  5'- cGGGCgGGGGCGGcggGgCCggGCGGGCGg -3'
miRNA:   3'- -CUCGgCCUCGUCuuaCaGG--UGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 3131 0.67 0.746359
Target:  5'- aGGCCGGGcGCGGGGcGcCCucgGCGGGCu -3'
miRNA:   3'- cUCGGCCU-CGUCUUaCaGG---UGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 45415 0.67 0.746359
Target:  5'- -uGCCGGuguguugugGGCcGGggGUUCGCGGGCGu -3'
miRNA:   3'- cuCGGCC---------UCGuCUuaCAGGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 83165 0.67 0.746359
Target:  5'- --cCUGGAGCucGGggUcGUCgCGCGGGCGg -3'
miRNA:   3'- cucGGCCUCG--UCuuA-CAG-GUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 4391 0.67 0.746359
Target:  5'- --cCCGGcGCGGGG-GUCCGCGGcGCGg -3'
miRNA:   3'- cucGGCCuCGUCUUaCAGGUGCC-CGU- -5'
29411 5' -58.1 NC_006151.1 + 22368 0.67 0.745391
Target:  5'- -cGCUGGcAGguGAGUGUaugggaaCCugGGGCc -3'
miRNA:   3'- cuCGGCC-UCguCUUACA-------GGugCCCGu -5'
29411 5' -58.1 NC_006151.1 + 5030 0.67 0.736639
Target:  5'- gGGGCCGGGGCcgGGGAgg-CCGCGG-CGg -3'
miRNA:   3'- -CUCGGCCUCG--UCUUacaGGUGCCcGU- -5'
29411 5' -58.1 NC_006151.1 + 139643 0.67 0.736639
Target:  5'- -cGCCGGcGCGGGGgucgCgGCGGGCGc -3'
miRNA:   3'- cuCGGCCuCGUCUUaca-GgUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 6558 0.67 0.735661
Target:  5'- -cGCCGGAGCGGAGacgGUCgGauccccuCGGGUu -3'
miRNA:   3'- cuCGGCCUCGUCUUa--CAGgU-------GCCCGu -5'
29411 5' -58.1 NC_006151.1 + 137797 0.67 0.716935
Target:  5'- -uGCUGGAGCGGGAcuucaucgaGcCCAUGGGCc -3'
miRNA:   3'- cuCGGCCUCGUCUUa--------CaGGUGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 36384 0.67 0.70697
Target:  5'- aGGCCGGGGCccccGGcgGcCC-CGGGCGc -3'
miRNA:   3'- cUCGGCCUCGu---CUuaCaGGuGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 64478 0.67 0.70697
Target:  5'- -cGCCGcGGCGGGGacGcCCGCGGGCGc -3'
miRNA:   3'- cuCGGCcUCGUCUUa-CaGGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 9041 0.67 0.70697
Target:  5'- -cGCCGGGGCGccccGcGUGcUCCGgGGGCGc -3'
miRNA:   3'- cuCGGCCUCGU----CuUAC-AGGUgCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 132824 0.68 0.696941
Target:  5'- cGGGCUGGccgcccGCGGGAcGgccaCCACGGGCGg -3'
miRNA:   3'- -CUCGGCCu-----CGUCUUaCa---GGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 96802 0.68 0.696941
Target:  5'- cGAGCCGGGGCGcGcgGgcuuuuagCgGCGGGCc -3'
miRNA:   3'- -CUCGGCCUCGUcUuaCa-------GgUGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 18418 0.68 0.696941
Target:  5'- -cGCCGGGGgAGGAgGgccgCCGgCGGGCGu -3'
miRNA:   3'- cuCGGCCUCgUCUUaCa---GGU-GCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.