miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29412 3' -61.5 NC_006151.1 + 115553 0.66 0.676149
Target:  5'- aCGGCGuACUcGC-CCGcggGCGGGCgCGCgGg -3'
miRNA:   3'- -GCCGC-UGA-CGaGGU---UGCCCGgGUGgC- -5'
29412 3' -61.5 NC_006151.1 + 107344 0.66 0.676149
Target:  5'- uCGGCGAC-GC-CCAcCcGGCCCGCgGc -3'
miRNA:   3'- -GCCGCUGaCGaGGUuGcCCGGGUGgC- -5'
29412 3' -61.5 NC_006151.1 + 31588 0.66 0.666357
Target:  5'- gGGCGGCgcGCUCC-GCGcuccCCCGCCGc -3'
miRNA:   3'- gCCGCUGa-CGAGGuUGCcc--GGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 78395 0.66 0.666357
Target:  5'- gGGCGGCcacggcgGCUCU--CGGGCCgcgagCGCCGu -3'
miRNA:   3'- gCCGCUGa------CGAGGuuGCCCGG-----GUGGC- -5'
29412 3' -61.5 NC_006151.1 + 92659 0.66 0.666357
Target:  5'- aGGCGcucgccCUGCUgCCGGCGGccggggacgcgcGCUCGCCGc -3'
miRNA:   3'- gCCGCu-----GACGA-GGUUGCC------------CGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 40438 0.66 0.666357
Target:  5'- cCGGCGGCgcuUGcCUCCc-CGGcGCCUGCCu -3'
miRNA:   3'- -GCCGCUG---AC-GAGGuuGCC-CGGGUGGc -5'
29412 3' -61.5 NC_006151.1 + 47418 0.66 0.666357
Target:  5'- cCGGCcaccaucuGAgUGC-CCAACcgGGGCCCGgCGg -3'
miRNA:   3'- -GCCG--------CUgACGaGGUUG--CCCGGGUgGC- -5'
29412 3' -61.5 NC_006151.1 + 78790 0.66 0.666357
Target:  5'- uCGGCGACUcGC-CCGcggcccuccGCGGGgCCCaguACCu -3'
miRNA:   3'- -GCCGCUGA-CGaGGU---------UGCCC-GGG---UGGc -5'
29412 3' -61.5 NC_006151.1 + 36698 0.66 0.666357
Target:  5'- -cGCGAgcccCUGCU-CGACGaGCCCGCCGc -3'
miRNA:   3'- gcCGCU----GACGAgGUUGCcCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 38391 0.66 0.666357
Target:  5'- cCGGCGGCgGCgggcgcccccUCCGGCcuccccggcuccGGGCCCuCCa -3'
miRNA:   3'- -GCCGCUGaCG----------AGGUUG------------CCCGGGuGGc -5'
29412 3' -61.5 NC_006151.1 + 120388 0.66 0.666357
Target:  5'- aCGGCcgugGACgUGCU-CAAC-GGCCCGCUGg -3'
miRNA:   3'- -GCCG----CUG-ACGAgGUUGcCCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 33549 0.66 0.665376
Target:  5'- aGGCGACgGCggaGACGGagacggagagaccGCCCGCCc -3'
miRNA:   3'- gCCGCUGaCGaggUUGCC-------------CGGGUGGc -5'
29412 3' -61.5 NC_006151.1 + 5746 0.66 0.656539
Target:  5'- aGGCcGC-GCcgCCGGCccGGGCUCACCGa -3'
miRNA:   3'- gCCGcUGaCGa-GGUUG--CCCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 56568 0.66 0.656539
Target:  5'- gGGCGACgcgccgccGC-CCGACGGGCUggugcggacgCGCCc -3'
miRNA:   3'- gCCGCUGa-------CGaGGUUGCCCGG----------GUGGc -5'
29412 3' -61.5 NC_006151.1 + 91750 0.66 0.656539
Target:  5'- gGGCGAgCggGCUCgGGCGGGCggugugCGCCa -3'
miRNA:   3'- gCCGCU-Ga-CGAGgUUGCCCGg-----GUGGc -5'
29412 3' -61.5 NC_006151.1 + 135159 0.66 0.656539
Target:  5'- cCGGCgGGCgcgGCcCgGACGGGCgccggcugccgCCGCCGg -3'
miRNA:   3'- -GCCG-CUGa--CGaGgUUGCCCG-----------GGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 10469 0.66 0.650639
Target:  5'- gCGGCGGCggugaaggaggagaGCcgcCCGGCGcGcGCCCGCCGc -3'
miRNA:   3'- -GCCGCUGa-------------CGa--GGUUGC-C-CGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 138710 0.66 0.646703
Target:  5'- cCGGCG-CUGCgcgCCGcgcGCGGGUCguguacgcgCGCCGc -3'
miRNA:   3'- -GCCGCuGACGa--GGU---UGCCCGG---------GUGGC- -5'
29412 3' -61.5 NC_006151.1 + 120047 0.66 0.646703
Target:  5'- aCGGCG--UGCUCC-ACGGGCa-GCCc -3'
miRNA:   3'- -GCCGCugACGAGGuUGCCCGggUGGc -5'
29412 3' -61.5 NC_006151.1 + 104818 0.66 0.646703
Target:  5'- uGGCGGCgGCgCgCGACGGcCUCGCCGc -3'
miRNA:   3'- gCCGCUGaCGaG-GUUGCCcGGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.