miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29412 5' -57.5 NC_006151.1 + 36127 0.66 0.811435
Target:  5'- cGCGGCcGCGGCcGgAGCcacgaGGCCGcCCc -3'
miRNA:   3'- uCGUCGuCGUCGaUgUCG-----UCGGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 105549 0.66 0.806095
Target:  5'- gAGCuGCGGCAcgacgcccugcgcgcGCU--GGCGGCCG-CCu -3'
miRNA:   3'- -UCGuCGUCGU---------------CGAugUCGUCGGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 91572 0.66 0.802503
Target:  5'- uGGCGGCGcGCGcguGCUcCAGguGCuCGUCg -3'
miRNA:   3'- -UCGUCGU-CGU---CGAuGUCguCG-GCAGg -5'
29412 5' -57.5 NC_006151.1 + 127926 0.66 0.802503
Target:  5'- gAGCGGgGGCGGCgagACGgGCAcggGCCaGUUCa -3'
miRNA:   3'- -UCGUCgUCGUCGa--UGU-CGU---CGG-CAGG- -5'
29412 5' -57.5 NC_006151.1 + 4864 0.66 0.802503
Target:  5'- cGGCGccGCcGUAGCggAC-GCGGCCGUCg -3'
miRNA:   3'- -UCGU--CGuCGUCGa-UGuCGUCGGCAGg -5'
29412 5' -57.5 NC_006151.1 + 45499 0.66 0.802503
Target:  5'- cGCAGC-GCcGCUuuCAGCcccaggAGCCGUCg -3'
miRNA:   3'- uCGUCGuCGuCGAu-GUCG------UCGGCAGg -5'
29412 5' -57.5 NC_006151.1 + 58321 0.66 0.802503
Target:  5'- -uCAGCGGCGGC-GCGcCGGCC-UCCg -3'
miRNA:   3'- ucGUCGUCGUCGaUGUcGUCGGcAGG- -5'
29412 5' -57.5 NC_006151.1 + 95305 0.66 0.802503
Target:  5'- cGCGGCccggcGCAGC-GCGGCAaagucgaaggcGCCGcCCg -3'
miRNA:   3'- uCGUCGu----CGUCGaUGUCGU-----------CGGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 123841 0.66 0.802503
Target:  5'- cGCuGCAGCuGC-GCGGgGcGCCGUCg -3'
miRNA:   3'- uCGuCGUCGuCGaUGUCgU-CGGCAGg -5'
29412 5' -57.5 NC_006151.1 + 130490 0.66 0.802503
Target:  5'- cGCAGCGcGCGGCgccACAcGCcGCgCGUCUc -3'
miRNA:   3'- uCGUCGU-CGUCGa--UGU-CGuCG-GCAGG- -5'
29412 5' -57.5 NC_006151.1 + 73392 0.66 0.801601
Target:  5'- cGCAGC-GCGGCcgccgcgUAC-GCGGCCGUg- -3'
miRNA:   3'- uCGUCGuCGUCG-------AUGuCGUCGGCAgg -5'
29412 5' -57.5 NC_006151.1 + 53257 0.66 0.793412
Target:  5'- uGGCGcGCAcGCGGC-ACAGCuGCCG-Cg -3'
miRNA:   3'- -UCGU-CGU-CGUCGaUGUCGuCGGCaGg -5'
29412 5' -57.5 NC_006151.1 + 4279 0.66 0.793412
Target:  5'- cGCcGCGGCAgGCcaggAC-GCAGgCGUCCg -3'
miRNA:   3'- uCGuCGUCGU-CGa---UGuCGUCgGCAGG- -5'
29412 5' -57.5 NC_006151.1 + 23838 0.66 0.793412
Target:  5'- cGCAucucGCAGCcGCgAgAGUAGuCCGUCCc -3'
miRNA:   3'- uCGU----CGUCGuCGaUgUCGUC-GGCAGG- -5'
29412 5' -57.5 NC_006151.1 + 26352 0.66 0.793412
Target:  5'- gGGCGGCGGCgGGCcGCgucggGGC-GCgCGUCCc -3'
miRNA:   3'- -UCGUCGUCG-UCGaUG-----UCGuCG-GCAGG- -5'
29412 5' -57.5 NC_006151.1 + 72174 0.66 0.793412
Target:  5'- gAGCAGCGGCGGg-ACgaGGCAcacGUgGUCCc -3'
miRNA:   3'- -UCGUCGUCGUCgaUG--UCGU---CGgCAGG- -5'
29412 5' -57.5 NC_006151.1 + 121162 0.66 0.793412
Target:  5'- uGguGCAGaCGGCcgugUAC-GCGGCCGUgCu -3'
miRNA:   3'- uCguCGUC-GUCG----AUGuCGUCGGCAgG- -5'
29412 5' -57.5 NC_006151.1 + 135495 0.66 0.793412
Target:  5'- aGGCGGCGcGCGGCcuCGGCcgaGGCCaucacGUCCu -3'
miRNA:   3'- -UCGUCGU-CGUCGauGUCG---UCGG-----CAGG- -5'
29412 5' -57.5 NC_006151.1 + 73269 0.66 0.790656
Target:  5'- aGGCGGUugccggcguugaccGuGCGGCgcaGGUAGUCGUCCg -3'
miRNA:   3'- -UCGUCG--------------U-CGUCGaugUCGUCGGCAGG- -5'
29412 5' -57.5 NC_006151.1 + 95024 0.66 0.784173
Target:  5'- cGCGcGUAGCGGCUguGCucgaAGCCGUCg -3'
miRNA:   3'- uCGU-CGUCGUCGA--UGucg-UCGGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.