miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29413 5' -63.9 NC_006151.1 + 82148 0.66 0.520252
Target:  5'- gGGCCCgGCGgcuCCAGguccgagccgagcGCCGGGGG-Cg-- -3'
miRNA:   3'- -CCGGGgCGC---GGUC-------------UGGCCCCCaGaag -5'
29413 5' -63.9 NC_006151.1 + 5886 0.67 0.509137
Target:  5'- gGGCCCCG-GCCucuGCCGcugcgagugcugccGGGGUCggCg -3'
miRNA:   3'- -CCGGGGCgCGGuc-UGGC--------------CCCCAGaaG- -5'
29413 5' -63.9 NC_006151.1 + 9049 0.67 0.5027
Target:  5'- cGCCCCGCGUgcu-CCGGGGG-Cg-- -3'
miRNA:   3'- cCGGGGCGCGgucuGGCCCCCaGaag -5'
29413 5' -63.9 NC_006151.1 + 3477 0.67 0.5027
Target:  5'- gGGCCCgagcggGCGCCGGAgCCGGucGUCcUCg -3'
miRNA:   3'- -CCGGGg-----CGCGGUCU-GGCCccCAGaAG- -5'
29413 5' -63.9 NC_006151.1 + 111266 0.67 0.493566
Target:  5'- aGGCCgggaaCCGCG-CGGGCgGGGGGUacgCg -3'
miRNA:   3'- -CCGG-----GGCGCgGUCUGgCCCCCAgaaG- -5'
29413 5' -63.9 NC_006151.1 + 98016 0.67 0.493566
Target:  5'- cGGCgCCG-GCCAGGuCCGcGGGGUg--- -3'
miRNA:   3'- -CCGgGGCgCGGUCU-GGC-CCCCAgaag -5'
29413 5' -63.9 NC_006151.1 + 33904 0.67 0.484509
Target:  5'- gGGCCUCGCGCCuccgcGuCCGGcGGG-CggaUCg -3'
miRNA:   3'- -CCGGGGCGCGGu----CuGGCC-CCCaGa--AG- -5'
29413 5' -63.9 NC_006151.1 + 39734 0.67 0.484509
Target:  5'- cGCUCCGCGCuCGGGCuCGGGGa----- -3'
miRNA:   3'- cCGGGGCGCG-GUCUG-GCCCCcagaag -5'
29413 5' -63.9 NC_006151.1 + 4864 0.67 0.483608
Target:  5'- cGGCgCCGCcguagcggacgcgGCCGucGGCCGGaGGGUCg-- -3'
miRNA:   3'- -CCGgGGCG-------------CGGU--CUGGCC-CCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 67876 0.67 0.475532
Target:  5'- uGGCgCgCGCGCCAGcCCGcGGGG-Ca-- -3'
miRNA:   3'- -CCGgG-GCGCGGUCuGGC-CCCCaGaag -5'
29413 5' -63.9 NC_006151.1 + 2289 0.67 0.474639
Target:  5'- gGGCgCCCGCGgCGGcgacggcGCCcGGGGUCa-- -3'
miRNA:   3'- -CCG-GGGCGCgGUC-------UGGcCCCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 3915 0.67 0.466639
Target:  5'- gGGCugCUCGgGCCAGAgCGGGGG-Ca-- -3'
miRNA:   3'- -CCG--GGGCgCGGUCUgGCCCCCaGaag -5'
29413 5' -63.9 NC_006151.1 + 5119 0.68 0.461344
Target:  5'- cGGCCCgGCgcgggcgaguggggcGCCGGGCCGGacuccuucGUCUUCu -3'
miRNA:   3'- -CCGGGgCG---------------CGGUCUGGCCcc------CAGAAG- -5'
29413 5' -63.9 NC_006151.1 + 92666 0.68 0.457833
Target:  5'- cGCCCUGCuGCCGGcgGCCGGGGa----- -3'
miRNA:   3'- cCGGGGCG-CGGUC--UGGCCCCcagaag -5'
29413 5' -63.9 NC_006151.1 + 8253 0.68 0.457833
Target:  5'- gGGCCggCGCGCCGGGacgccccuCCGGGGGa---- -3'
miRNA:   3'- -CCGGg-GCGCGGUCU--------GGCCCCCagaag -5'
29413 5' -63.9 NC_006151.1 + 114685 0.68 0.449116
Target:  5'- aGGCCUCGUGCUcGAagggcgcguccCCGGGGGcggUUUCc -3'
miRNA:   3'- -CCGGGGCGCGGuCU-----------GGCCCCCa--GAAG- -5'
29413 5' -63.9 NC_006151.1 + 134806 0.68 0.440492
Target:  5'- cGGCggCCCGCGCCGGACCcGGacGGUg--- -3'
miRNA:   3'- -CCG--GGGCGCGGUCUGGcCC--CCAgaag -5'
29413 5' -63.9 NC_006151.1 + 104417 0.68 0.440492
Target:  5'- uGG-CCCGCGCCGccGCCGGcauGGGgcgCUUCa -3'
miRNA:   3'- -CCgGGGCGCGGUc-UGGCC---CCCa--GAAG- -5'
29413 5' -63.9 NC_006151.1 + 59841 0.68 0.440492
Target:  5'- cGCCaCCG-GCCGGuCCGGGGGgcgCa-- -3'
miRNA:   3'- cCGG-GGCgCGGUCuGGCCCCCa--Gaag -5'
29413 5' -63.9 NC_006151.1 + 23122 0.68 0.437923
Target:  5'- cGGCCCCGCGCCccuccuccgucgccGGGCCcucGGcGGGa---- -3'
miRNA:   3'- -CCGGGGCGCGG--------------UCUGG---CC-CCCagaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.