miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29414 3' -57.5 NC_006151.1 + 4897 0.68 0.754606
Target:  5'- gAgGGUCGGAgCCGGGCCAGgGcuccccgagCGGGg -3'
miRNA:   3'- gUgCCAGCCU-GGUCUGGUCgUa--------GCCU- -5'
29414 3' -57.5 NC_006151.1 + 75096 0.68 0.754606
Target:  5'- gCGCaGGUCGGcguuGCCGGgcGCCAGCAgcuggUCGGc -3'
miRNA:   3'- -GUG-CCAGCC----UGGUC--UGGUCGU-----AGCCu -5'
29414 3' -57.5 NC_006151.1 + 135161 0.68 0.754606
Target:  5'- gGCGGgcgCGGcCCGGACgGGCGcCGGc -3'
miRNA:   3'- gUGCCa--GCCuGGUCUGgUCGUaGCCu -5'
29414 3' -57.5 NC_006151.1 + 109451 0.68 0.753658
Target:  5'- uCGCGGcCGGccccgacGCCGGAgCGGCA-CGGGg -3'
miRNA:   3'- -GUGCCaGCC-------UGGUCUgGUCGUaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 128540 0.68 0.745079
Target:  5'- cCACGG-CGGGCCc-GCCGGCG-CGGu -3'
miRNA:   3'- -GUGCCaGCCUGGucUGGUCGUaGCCu -5'
29414 3' -57.5 NC_006151.1 + 28793 0.69 0.715954
Target:  5'- gGCGGUCcGGCCcgcgGGACgGGCGUcCGGGa -3'
miRNA:   3'- gUGCCAGcCUGG----UCUGgUCGUA-GCCU- -5'
29414 3' -57.5 NC_006151.1 + 28512 0.69 0.715954
Target:  5'- gGCGGUCcGGCCcgcgGGACgGGCGUcCGGGa -3'
miRNA:   3'- gUGCCAGcCUGG----UCUGgUCGUA-GCCU- -5'
29414 3' -57.5 NC_006151.1 + 3115 0.69 0.715954
Target:  5'- cCGCGGcgCGGGucCCAGGCCGgGCG-CGGGg -3'
miRNA:   3'- -GUGCCa-GCCU--GGUCUGGU-CGUaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 68476 0.69 0.715954
Target:  5'- gCGCGG-CGGGCCAcuCCAGC--CGGAg -3'
miRNA:   3'- -GUGCCaGCCUGGUcuGGUCGuaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 119793 0.69 0.696173
Target:  5'- gACGGUgaCGGACCAcGCCGGCuucCGGc -3'
miRNA:   3'- gUGCCA--GCCUGGUcUGGUCGua-GCCu -5'
29414 3' -57.5 NC_006151.1 + 99198 0.69 0.684199
Target:  5'- cCACGGgcgugugggaggCGGugCAGGCCAGCGccUCGc- -3'
miRNA:   3'- -GUGCCa-----------GCCugGUCUGGUCGU--AGCcu -5'
29414 3' -57.5 NC_006151.1 + 26347 0.69 0.676182
Target:  5'- uCACGGggCGGcGgCGGGCC-GCGUCGGGg -3'
miRNA:   3'- -GUGCCa-GCC-UgGUCUGGuCGUAGCCU- -5'
29414 3' -57.5 NC_006151.1 + 142987 0.7 0.645953
Target:  5'- cCGCGGgUGGGCCcGACCgcAGCAUCGcGGc -3'
miRNA:   3'- -GUGCCaGCCUGGuCUGG--UCGUAGC-CU- -5'
29414 3' -57.5 NC_006151.1 + 4120 0.7 0.645953
Target:  5'- cCGCGGccugccgccgcUCGG-CCGGGCCGGCccCGGGg -3'
miRNA:   3'- -GUGCC-----------AGCCuGGUCUGGUCGuaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 14644 0.7 0.645953
Target:  5'- gGCGGcCGGGCuCGGGuccgguuccgggUCGGCGUCGGGg -3'
miRNA:   3'- gUGCCaGCCUG-GUCU------------GGUCGUAGCCU- -5'
29414 3' -57.5 NC_006151.1 + 68048 0.7 0.635845
Target:  5'- gCGCGG-CGGGCaCGGGCuCGGCGaCGGGc -3'
miRNA:   3'- -GUGCCaGCCUG-GUCUG-GUCGUaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 60499 0.7 0.625734
Target:  5'- cCACGaGcUCGGAgaAGGCCAGCGUCGa- -3'
miRNA:   3'- -GUGC-C-AGCCUggUCUGGUCGUAGCcu -5'
29414 3' -57.5 NC_006151.1 + 111345 0.7 0.615627
Target:  5'- gACGGUCGGG-CGGAUgGGCGcgCGGGg -3'
miRNA:   3'- gUGCCAGCCUgGUCUGgUCGUa-GCCU- -5'
29414 3' -57.5 NC_006151.1 + 57591 0.7 0.615627
Target:  5'- gGCGcaCGuGACCAGGCCGGCcUCGGc -3'
miRNA:   3'- gUGCcaGC-CUGGUCUGGUCGuAGCCu -5'
29414 3' -57.5 NC_006151.1 + 88203 0.7 0.605532
Target:  5'- -gUGGUCGGACCAGGCgaGGCGcgccucCGGGg -3'
miRNA:   3'- guGCCAGCCUGGUCUGg-UCGUa-----GCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.