miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29414 5' -59 NC_006151.1 + 1801 0.66 0.83617
Target:  5'- aCCgggCCGGGGagGCAggcgcCGGggaggcaaGCgccgCCGGGCCg -3'
miRNA:   3'- -GGa--GGCCCC--UGUa----GCC--------UGa---GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 100347 0.66 0.835374
Target:  5'- gCgUCUGGcGGACGUCguGGACgccgugggcgccuUCCGcGCCg -3'
miRNA:   3'- -GgAGGCC-CCUGUAG--CCUG-------------AGGCuCGG- -5'
29414 5' -59 NC_006151.1 + 137608 0.66 0.828139
Target:  5'- --aUCGGGGGCG-CGGGCggggaccCCGGcGCCu -3'
miRNA:   3'- ggaGGCCCCUGUaGCCUGa------GGCU-CGG- -5'
29414 5' -59 NC_006151.1 + 6120 0.66 0.828139
Target:  5'- ---aCGGGGcgGCcUCGuGGCUCCG-GCCg -3'
miRNA:   3'- ggagGCCCC--UGuAGC-CUGAGGCuCGG- -5'
29414 5' -59 NC_006151.1 + 141969 0.66 0.828139
Target:  5'- gCUCUGcGGGAUccgGUCGGGCggcCCGGGa- -3'
miRNA:   3'- gGAGGC-CCCUG---UAGCCUGa--GGCUCgg -5'
29414 5' -59 NC_006151.1 + 80833 0.66 0.828139
Target:  5'- --gCC-GGGACA-CGGGCg-CGAGCCg -3'
miRNA:   3'- ggaGGcCCCUGUaGCCUGagGCUCGG- -5'
29414 5' -59 NC_006151.1 + 78127 0.66 0.828139
Target:  5'- uCCUgCGGcGGGCcgCGGGCgccucggaCGAcGCCu -3'
miRNA:   3'- -GGAgGCC-CCUGuaGCCUGag------GCU-CGG- -5'
29414 5' -59 NC_006151.1 + 37099 0.66 0.828139
Target:  5'- uCCUCCGaGGGAgaagaagaCGaaGGAgUCCG-GCCc -3'
miRNA:   3'- -GGAGGC-CCCU--------GUagCCUgAGGCuCGG- -5'
29414 5' -59 NC_006151.1 + 7721 0.67 0.776729
Target:  5'- --aCCGGGGACcggcgacCGGAC-CCGAaCCg -3'
miRNA:   3'- ggaGGCCCCUGua-----GCCUGaGGCUcGG- -5'
29414 5' -59 NC_006151.1 + 5261 0.67 0.776729
Target:  5'- gCC-CgGGGGGCGgagggcgagCGGGCcggggagaggUCCGAGUCg -3'
miRNA:   3'- -GGaGgCCCCUGUa--------GCCUG----------AGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 6474 0.67 0.771322
Target:  5'- uUCUCUGGcGGGCcgagagccucgguggGUCGGGCgUCCGucgagggcugauAGCCg -3'
miRNA:   3'- -GGAGGCC-CCUG---------------UAGCCUG-AGGC------------UCGG- -5'
29414 5' -59 NC_006151.1 + 36515 0.67 0.758547
Target:  5'- cCCgggCCGGcGGcGCGgccUCGGACcCCGGcGCCa -3'
miRNA:   3'- -GGa--GGCC-CC-UGU---AGCCUGaGGCU-CGG- -5'
29414 5' -59 NC_006151.1 + 110419 0.67 0.749297
Target:  5'- aCUUgGGGGAgcUCgGGGCccgagUCCGGGCCc -3'
miRNA:   3'- gGAGgCCCCUguAG-CCUG-----AGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 26844 0.67 0.776729
Target:  5'- aCU-CGGacgcGACggUGGugUCCGAGCCg -3'
miRNA:   3'- gGAgGCCc---CUGuaGCCugAGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 42257 0.67 0.776729
Target:  5'- gCCcCCGGGGAgCGgggggUGGGaUCgCGAGCCu -3'
miRNA:   3'- -GGaGGCCCCU-GUa----GCCUgAG-GCUCGG- -5'
29414 5' -59 NC_006151.1 + 10996 0.67 0.780309
Target:  5'- gCgggCCGGGGGCccCGGcucgcccgcccgcucGCUcgCCGGGCCg -3'
miRNA:   3'- gGa--GGCCCCUGuaGCC---------------UGA--GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 19844 0.67 0.784757
Target:  5'- --cCCGGGGuCGucUCGGcggagagGCUCgGGGCCu -3'
miRNA:   3'- ggaGGCCCCuGU--AGCC-------UGAGgCUCGG- -5'
29414 5' -59 NC_006151.1 + 4886 0.67 0.785643
Target:  5'- gCCgucggCCGGaGGG--UCGGAg-CCGGGCCa -3'
miRNA:   3'- -GGa----GGCC-CCUguAGCCUgaGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 131735 0.67 0.785643
Target:  5'- ---gCGGGGugG-CGGGC-CCGGGCg -3'
miRNA:   3'- ggagGCCCCugUaGCCUGaGGCUCGg -5'
29414 5' -59 NC_006151.1 + 98355 0.67 0.749297
Target:  5'- --cCCGcGGGCGUgcgCGGGCUCUGGGCg -3'
miRNA:   3'- ggaGGCcCCUGUA---GCCUGAGGCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.