miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29414 5' -59 NC_006151.1 + 17723 0.66 0.80308
Target:  5'- cCCgggugcgCCGGGGcccauuUAUUGuGACaagUCCGAGCCc -3'
miRNA:   3'- -GGa------GGCCCCu-----GUAGC-CUG---AGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 30808 0.66 0.80308
Target:  5'- gCC-CCGGGGGCAcgCGGGCgggagGAGUUg -3'
miRNA:   3'- -GGaGGCCCCUGUa-GCCUGagg--CUCGG- -5'
29414 5' -59 NC_006151.1 + 134946 0.66 0.80308
Target:  5'- cUCUCCGGcuACAucuugcaggccUCGGccagcCUCCGGGCCu -3'
miRNA:   3'- -GGAGGCCccUGU-----------AGCCu----GAGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 36322 0.66 0.79443
Target:  5'- gCC-CCGGucccGGGC--CGG-CUCCGGGCCc -3'
miRNA:   3'- -GGaGGCC----CCUGuaGCCuGAGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 111850 0.66 0.79443
Target:  5'- gCgUCgGGGGGCGcUCGGGgUCgCaGGCCg -3'
miRNA:   3'- -GgAGgCCCCUGU-AGCCUgAG-GcUCGG- -5'
29414 5' -59 NC_006151.1 + 81354 0.66 0.79443
Target:  5'- gCCgcgcCCGGGGcCccggCGGGCgccagCgCGAGCCg -3'
miRNA:   3'- -GGa---GGCCCCuGua--GCCUGa----G-GCUCGG- -5'
29414 5' -59 NC_006151.1 + 55465 0.66 0.791808
Target:  5'- cCCgCCGGGGggcgcgcgcccggcGCcgCGGACggCC-AGCCg -3'
miRNA:   3'- -GGaGGCCCC--------------UGuaGCCUGa-GGcUCGG- -5'
29414 5' -59 NC_006151.1 + 127367 0.66 0.791808
Target:  5'- cCCUgggCGGGGACcgCGGggguggcgggggccGCggCCGAGUCg -3'
miRNA:   3'- -GGAg--GCCCCUGuaGCC--------------UGa-GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 17048 0.67 0.785643
Target:  5'- aCgUCCaGGG-CGUCGGcguccgucaGC-CCGGGCCg -3'
miRNA:   3'- -GgAGGcCCCuGUAGCC---------UGaGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 131735 0.67 0.785643
Target:  5'- ---gCGGGGugG-CGGGC-CCGGGCg -3'
miRNA:   3'- ggagGCCCCugUaGCCUGaGGCUCGg -5'
29414 5' -59 NC_006151.1 + 4886 0.67 0.785643
Target:  5'- gCCgucggCCGGaGGG--UCGGAg-CCGGGCCa -3'
miRNA:   3'- -GGa----GGCC-CCUguAGCCUgaGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 19844 0.67 0.784757
Target:  5'- --cCCGGGGuCGucUCGGcggagagGCUCgGGGCCu -3'
miRNA:   3'- ggaGGCCCCuGU--AGCC-------UGAGgCUCGG- -5'
29414 5' -59 NC_006151.1 + 10996 0.67 0.780309
Target:  5'- gCgggCCGGGGGCccCGGcucgcccgcccgcucGCUcgCCGGGCCg -3'
miRNA:   3'- gGa--GGCCCCUGuaGCC---------------UGA--GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 42257 0.67 0.776729
Target:  5'- gCCcCCGGGGAgCGgggggUGGGaUCgCGAGCCu -3'
miRNA:   3'- -GGaGGCCCCU-GUa----GCCUgAG-GCUCGG- -5'
29414 5' -59 NC_006151.1 + 26844 0.67 0.776729
Target:  5'- aCU-CGGacgcGACggUGGugUCCGAGCCg -3'
miRNA:   3'- gGAgGCCc---CUGuaGCCugAGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 7721 0.67 0.776729
Target:  5'- --aCCGGGGACcggcgacCGGAC-CCGAaCCg -3'
miRNA:   3'- ggaGGCCCCUGua-----GCCUGaGGCUcGG- -5'
29414 5' -59 NC_006151.1 + 5261 0.67 0.776729
Target:  5'- gCC-CgGGGGGCGgagggcgagCGGGCcggggagaggUCCGAGUCg -3'
miRNA:   3'- -GGaGgCCCCUGUa--------GCCUG----------AGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 6474 0.67 0.771322
Target:  5'- uUCUCUGGcGGGCcgagagccucgguggGUCGGGCgUCCGucgagggcugauAGCCg -3'
miRNA:   3'- -GGAGGCC-CCUG---------------UAGCCUG-AGGC------------UCGG- -5'
29414 5' -59 NC_006151.1 + 36515 0.67 0.758547
Target:  5'- cCCgggCCGGcGGcGCGgccUCGGACcCCGGcGCCa -3'
miRNA:   3'- -GGa--GGCC-CC-UGU---AGCCUGaGGCU-CGG- -5'
29414 5' -59 NC_006151.1 + 98355 0.67 0.749297
Target:  5'- --cCCGcGGGCGUgcgCGGGCUCUGGGCg -3'
miRNA:   3'- ggaGGCcCCUGUA---GCCUGAGGCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.