miRNA display CGI


Results 21 - 40 of 266 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29415 3' -69 NC_006151.1 + 142754 0.66 0.375078
Target:  5'- gCCCaGCucuccCCCGGGCCC-CCCCAc-- -3'
miRNA:   3'- gGGGgCGc----GGGCCCGGGcGGGGUagc -5'
29415 3' -69 NC_006151.1 + 3579 0.66 0.367686
Target:  5'- gCgCuuGCGCCgGGGCCCccgGUCCUcuucGUCGu -3'
miRNA:   3'- -GgGggCGCGGgCCCGGG---CGGGG----UAGC- -5'
29415 3' -69 NC_006151.1 + 17955 0.66 0.367686
Target:  5'- uCUCCgGCGCCCGccuGCCggCGUCCCAcgCGg -3'
miRNA:   3'- -GGGGgCGCGGGCc--CGG--GCGGGGUa-GC- -5'
29415 3' -69 NC_006151.1 + 137627 0.66 0.367686
Target:  5'- aCCCCgGCGCCUccGCCCucguccgcGCcCCCGUCc -3'
miRNA:   3'- -GGGGgCGCGGGccCGGG--------CG-GGGUAGc -5'
29415 3' -69 NC_006151.1 + 50394 0.66 0.367686
Target:  5'- gCCCCGCgGUCCucgcgcGGCCC-CCCCGaCGa -3'
miRNA:   3'- gGGGGCG-CGGGc-----CCGGGcGGGGUaGC- -5'
29415 3' -69 NC_006151.1 + 58338 0.66 0.367686
Target:  5'- gCCUCCGCGUaggCGcgcgcgaagcuGGUCCGCCgCGUCGu -3'
miRNA:   3'- -GGGGGCGCGg--GC-----------CCGGGCGGgGUAGC- -5'
29415 3' -69 NC_006151.1 + 117966 0.66 0.367686
Target:  5'- uCCgCCGCGCCUucucucuCCCGCuCCCGUCu -3'
miRNA:   3'- -GGgGGCGCGGGccc----GGGCG-GGGUAGc -5'
29415 3' -69 NC_006151.1 + 132859 0.66 0.366953
Target:  5'- --gCCG-GCCCgGGGCCgCGCCCCccagcagggccucGUCGa -3'
miRNA:   3'- gggGGCgCGGG-CCCGG-GCGGGG-------------UAGC- -5'
29415 3' -69 NC_006151.1 + 86426 0.66 0.366953
Target:  5'- gUCCCUguccucgcgGCGCCUGGcGCCCGgcgaggcCCCCGaCGa -3'
miRNA:   3'- -GGGGG---------CGCGGGCC-CGGGC-------GGGGUaGC- -5'
29415 3' -69 NC_006151.1 + 31032 0.66 0.365488
Target:  5'- gCCCUCGCgGCCCGGGagaagccuucccggaCGCgCCAUUa -3'
miRNA:   3'- -GGGGGCG-CGGGCCCgg-------------GCGgGGUAGc -5'
29415 3' -69 NC_006151.1 + 105403 0.66 0.363299
Target:  5'- -aCCCGCGCCU--GCCCGCCaaguucguggggcgCAUCGa -3'
miRNA:   3'- ggGGGCGCGGGccCGGGCGGg-------------GUAGC- -5'
29415 3' -69 NC_006151.1 + 50010 0.66 0.360395
Target:  5'- gCgCCGCGCgCGcGGCCCGCgcggcgccCCCGggcgCGg -3'
miRNA:   3'- gGgGGCGCGgGC-CCGGGCG--------GGGUa---GC- -5'
29415 3' -69 NC_006151.1 + 28140 0.66 0.360395
Target:  5'- gCUCCGCGCCUcu-CCCGgucgauCCCCGUCGg -3'
miRNA:   3'- gGGGGCGCGGGcccGGGC------GGGGUAGC- -5'
29415 3' -69 NC_006151.1 + 102882 0.66 0.360395
Target:  5'- aCgCCGCGgUggCGGGCcugcgCCGCCUCGUCGa -3'
miRNA:   3'- gGgGGCGCgG--GCCCG-----GGCGGGGUAGC- -5'
29415 3' -69 NC_006151.1 + 128287 0.66 0.360395
Target:  5'- gCCgCGCGCagguaCGGGUCCuccaUCCCGUCGu -3'
miRNA:   3'- gGGgGCGCGg----GCCCGGGc---GGGGUAGC- -5'
29415 3' -69 NC_006151.1 + 130278 0.66 0.360395
Target:  5'- gCCCCGagGCCgCGGGCgCGCgCCGg-- -3'
miRNA:   3'- gGGGGCg-CGG-GCCCGgGCGgGGUagc -5'
29415 3' -69 NC_006151.1 + 43966 0.66 0.360395
Target:  5'- gCCCCGaccCGCCC--GCCUGCUCUAUCa -3'
miRNA:   3'- gGGGGC---GCGGGccCGGGCGGGGUAGc -5'
29415 3' -69 NC_006151.1 + 82614 0.66 0.356069
Target:  5'- -gCCCGCGCgCGGGCgCCGCggugggcgcgggaccCCCcugCGg -3'
miRNA:   3'- ggGGGCGCGgGCCCG-GGCG---------------GGGua-GC- -5'
29415 3' -69 NC_006151.1 + 65622 0.66 0.353206
Target:  5'- gCCCCGacgGCCaCGGGgUCGCCCgugagGUCGa -3'
miRNA:   3'- gGGGGCg--CGG-GCCCgGGCGGGg----UAGC- -5'
29415 3' -69 NC_006151.1 + 39946 0.66 0.353206
Target:  5'- gCCCCGCuggugcugacCCCGGGCgCCGUCgCCGccgCGg -3'
miRNA:   3'- gGGGGCGc---------GGGCCCG-GGCGG-GGUa--GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.