miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29415 5' -54.2 NC_006151.1 + 13169 0.68 0.908664
Target:  5'- uUCCGGgacGGUcGCCGCGgcCGUcucGGGGCCc -3'
miRNA:   3'- -AGGCUa--CCAcUGGCGUa-GCA---UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 19429 0.68 0.908664
Target:  5'- cUCCGG-GGUGACgauggGCGgcucgCGcUGGAGCCg -3'
miRNA:   3'- -AGGCUaCCACUGg----CGUa----GC-AUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 127379 0.68 0.908664
Target:  5'- aCCGcgGGgguggcgggGGCCGCGgccgagUCGacgGGAGCCc -3'
miRNA:   3'- aGGCuaCCa--------CUGGCGU------AGCa--UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 97239 0.68 0.895933
Target:  5'- uUCCGGgUGGcgcGGCCGCGcaugUCG-GGGGCCc -3'
miRNA:   3'- -AGGCU-ACCa--CUGGCGU----AGCaUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 136865 0.68 0.895933
Target:  5'- gCCGc--GUGACCGcCGUCGaGGAGCg -3'
miRNA:   3'- aGGCuacCACUGGC-GUAGCaUCUCGg -5'
29415 5' -54.2 NC_006151.1 + 41482 0.68 0.889215
Target:  5'- -aCGAcGGcGACCGCGUgGcgcgaggGGAGCCa -3'
miRNA:   3'- agGCUaCCaCUGGCGUAgCa------UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 14659 0.68 0.889215
Target:  5'- gUCCGGUuccGG-GuCgGCGUCGgGGAGCCu -3'
miRNA:   3'- -AGGCUA---CCaCuGgCGUAGCaUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 2893 0.69 0.875095
Target:  5'- cUCGAUGGUGuCCaGCA-CGauGAGCCg -3'
miRNA:   3'- aGGCUACCACuGG-CGUaGCauCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 102543 0.69 0.867701
Target:  5'- -aCGGUGGUGGCgCGCG-CGc-GGGCCc -3'
miRNA:   3'- agGCUACCACUG-GCGUaGCauCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 92552 0.69 0.867701
Target:  5'- cUCGGUgcagcaGGUGGCCGaGUCGcuggAGGGCCg -3'
miRNA:   3'- aGGCUA------CCACUGGCgUAGCa---UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 4922 0.69 0.860093
Target:  5'- cCCGAgcggGGUGAgcagcggcCCGUcgGUCGgcgGGGGCCc -3'
miRNA:   3'- aGGCUa---CCACU--------GGCG--UAGCa--UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 17350 0.69 0.85932
Target:  5'- cUCGGUGGUGAuguagaaCgGCGcCGUGGGGUCg -3'
miRNA:   3'- aGGCUACCACU-------GgCGUaGCAUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 72910 0.69 0.852275
Target:  5'- cCCGGcucuUGGcGACCGCcUCGgcGGGCg -3'
miRNA:   3'- aGGCU----ACCaCUGGCGuAGCauCUCGg -5'
29415 5' -54.2 NC_006151.1 + 29105 0.69 0.852275
Target:  5'- cCCGGaaauuuccGG-GACCGCAUCGc-GGGCCg -3'
miRNA:   3'- aGGCUa-------CCaCUGGCGUAGCauCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 4145 0.69 0.844255
Target:  5'- gCCGGccccgGG-GAUCGCGUCGcGGAGCg -3'
miRNA:   3'- aGGCUa----CCaCUGGCGUAGCaUCUCGg -5'
29415 5' -54.2 NC_006151.1 + 35238 0.69 0.836039
Target:  5'- gCCGAga-UGGCCGCcgCG-GGGGCCg -3'
miRNA:   3'- aGGCUaccACUGGCGuaGCaUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 105523 0.7 0.827636
Target:  5'- aCCGcAUGGcGGCgCGCAUCGggcccGAGCUg -3'
miRNA:   3'- aGGC-UACCaCUG-GCGUAGCau---CUCGG- -5'
29415 5' -54.2 NC_006151.1 + 77002 0.7 0.819051
Target:  5'- gCCGcgagGGUGGcCCGCGagcCGUGGAGCg -3'
miRNA:   3'- aGGCua--CCACU-GGCGUa--GCAUCUCGg -5'
29415 5' -54.2 NC_006151.1 + 85142 0.7 0.792296
Target:  5'- aCC--UGGUGcACCGCGUgCGgcagGGGGCCg -3'
miRNA:   3'- aGGcuACCAC-UGGCGUA-GCa---UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 96316 0.71 0.783073
Target:  5'- gCCGAcUGcaGGCCGCGcgCGUAGAGCg -3'
miRNA:   3'- aGGCU-ACcaCUGGCGUa-GCAUCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.