miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29417 3' -61.4 NC_006151.1 + 31239 0.66 0.660905
Target:  5'- cGGCC-CGGCgagCgaGcGGGCGGGCgaGCCg -3'
miRNA:   3'- cCUGGaGUCGa--GgaC-CCCGCUCG--CGG- -5'
29417 3' -61.4 NC_006151.1 + 8247 0.66 0.658937
Target:  5'- aGGGCCgggcCGGCgcgccgggacgccccUCCggGGGaaagaguguccccgcGCGGGCGCCg -3'
miRNA:   3'- -CCUGGa---GUCG---------------AGGa-CCC---------------CGCUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 49223 0.66 0.654013
Target:  5'- gGGuCCcCGGCUCCcacgccccgcucggcUGGGcGCGGcucgugcGCGCCg -3'
miRNA:   3'- -CCuGGaGUCGAGG---------------ACCC-CGCU-------CGCGG- -5'
29417 3' -61.4 NC_006151.1 + 71198 0.66 0.651056
Target:  5'- uGGCCUCgcaggAGCUCgUGuccgugaccguGGGCGcgcGCGCCg -3'
miRNA:   3'- cCUGGAG-----UCGAGgAC-----------CCCGCu--CGCGG- -5'
29417 3' -61.4 NC_006151.1 + 100960 0.66 0.65007
Target:  5'- gGGugCccguggaUCGGCUCCUGGccgaGGuCGA-CGCCg -3'
miRNA:   3'- -CCugG-------AGUCGAGGACC----CC-GCUcGCGG- -5'
29417 3' -61.4 NC_006151.1 + 66606 0.66 0.641193
Target:  5'- cGACUUC-GCcgCCUacgacGGCGAGCGCCu -3'
miRNA:   3'- cCUGGAGuCGa-GGAcc---CCGCUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 72047 0.66 0.641193
Target:  5'- -cGCCgcgCAGCgUCUcGGcGGCGcGCGCCa -3'
miRNA:   3'- ccUGGa--GUCG-AGGaCC-CCGCuCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 121444 0.66 0.638233
Target:  5'- cGGCCUCgcuggugcccgcggAGCUgg-GGGGCaAGCGCCc -3'
miRNA:   3'- cCUGGAG--------------UCGAggaCCCCGcUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 131923 0.66 0.638233
Target:  5'- aGGGCCUCcgcggugcugccguAGCUggCCacGGGCGAGgGCg -3'
miRNA:   3'- -CCUGGAG--------------UCGA--GGacCCCGCUCgCGg -5'
29417 3' -61.4 NC_006151.1 + 59539 0.66 0.638233
Target:  5'- aGGGCC-CAGCgcgCgggcacguugaaguCgGGGGCcAGCGCCg -3'
miRNA:   3'- -CCUGGaGUCGa--G--------------GaCCCCGcUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 86557 0.67 0.631324
Target:  5'- uGGcGCCguuccggCAGCUCUcGGcGCGGGCGCg -3'
miRNA:   3'- -CC-UGGa------GUCGAGGaCCcCGCUCGCGg -5'
29417 3' -61.4 NC_006151.1 + 649 0.67 0.631324
Target:  5'- cGGCUUCcggGGCgcggCC-GGGGCGGGCuCCg -3'
miRNA:   3'- cCUGGAG---UCGa---GGaCCCCGCUCGcGG- -5'
29417 3' -61.4 NC_006151.1 + 26351 0.67 0.631324
Target:  5'- gGGGCggCGGCgggCCgcgucGGGGCGcGCGUCc -3'
miRNA:   3'- -CCUGgaGUCGa--GGa----CCCCGCuCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 72906 0.67 0.631324
Target:  5'- -aGCCccCGGCUCUUGGcgaccgccucGGCGGGCGUg -3'
miRNA:   3'- ccUGGa-GUCGAGGACC----------CCGCUCGCGg -5'
29417 3' -61.4 NC_006151.1 + 107030 0.67 0.631324
Target:  5'- uGAUCgcggcgCGGCcCCUGGccGGCGAGCcgGCCu -3'
miRNA:   3'- cCUGGa-----GUCGaGGACC--CCGCUCG--CGG- -5'
29417 3' -61.4 NC_006151.1 + 130923 0.67 0.631324
Target:  5'- uGGCCg-GGC-CCgcgGGGGCGGGgGCg -3'
miRNA:   3'- cCUGGagUCGaGGa--CCCCGCUCgCGg -5'
29417 3' -61.4 NC_006151.1 + 126389 0.67 0.62935
Target:  5'- cGGGCC-CGcGCUgCUggccagccgcgucGGGGCGAuggccacGCGCCg -3'
miRNA:   3'- -CCUGGaGU-CGAgGA-------------CCCCGCU-------CGCGG- -5'
29417 3' -61.4 NC_006151.1 + 20610 0.67 0.621455
Target:  5'- cGGACgaCGGCg--UGGGGUgguggGGGCGCCc -3'
miRNA:   3'- -CCUGgaGUCGaggACCCCG-----CUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 19691 0.67 0.621455
Target:  5'- uGGGCCggggguGcCUCCcucagGGaGGCGAGgGCCg -3'
miRNA:   3'- -CCUGGagu---C-GAGGa----CC-CCGCUCgCGG- -5'
29417 3' -61.4 NC_006151.1 + 121249 0.67 0.621455
Target:  5'- uGGACgaCgAGUUCCUGGcGGCc-GCGCUg -3'
miRNA:   3'- -CCUGgaG-UCGAGGACC-CCGcuCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.