miRNA display CGI


Results 21 - 40 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29417 5' -53.3 NC_006151.1 + 126246 0.66 0.974268
Target:  5'- aCGACGAaGACgCUCAagGAGGACgGCGu -3'
miRNA:   3'- aGCUGCUgUUG-GGGUagCUCUUG-CGC- -5'
29417 5' -53.3 NC_006151.1 + 139957 0.66 0.974268
Target:  5'- uUCGGCGccgaGCAguucACCCCGgaCGGGcGGCGCGu -3'
miRNA:   3'- -AGCUGC----UGU----UGGGGUa-GCUC-UUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 66815 0.66 0.974268
Target:  5'- aCGACGACGGCgaCGagGAGGAUGgGg -3'
miRNA:   3'- aGCUGCUGUUGggGUagCUCUUGCgC- -5'
29417 5' -53.3 NC_006151.1 + 98671 0.66 0.974268
Target:  5'- cCGACGACGuccuggccgcGCCCCGcgUCGugcccccggagcAGAcgGCGCGc -3'
miRNA:   3'- aGCUGCUGU----------UGGGGU--AGC------------UCU--UGCGC- -5'
29417 5' -53.3 NC_006151.1 + 95096 0.66 0.974003
Target:  5'- aUGACGccguagaGCAGCUCC-UCGGcGAugGCGg -3'
miRNA:   3'- aGCUGC-------UGUUGGGGuAGCU-CUugCGC- -5'
29417 5' -53.3 NC_006151.1 + 2607 0.66 0.97153
Target:  5'- gCGGCGGCAGCgggaCCGgggucCGGGGcccgGCGCGg -3'
miRNA:   3'- aGCUGCUGUUGg---GGUa----GCUCU----UGCGC- -5'
29417 5' -53.3 NC_006151.1 + 2218 0.66 0.97153
Target:  5'- cUCcACGGCGcCCCCggCGGcGGCGCGg -3'
miRNA:   3'- -AGcUGCUGUuGGGGuaGCUcUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 3330 0.66 0.97153
Target:  5'- uUCGGgGAaGACCuCCugguccaCGAGGGCGCGg -3'
miRNA:   3'- -AGCUgCUgUUGG-GGua-----GCUCUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 119599 0.66 0.97153
Target:  5'- cCGACGG-AGCCCCAugggcgucuUCGGGAccaugaacaGCGCc -3'
miRNA:   3'- aGCUGCUgUUGGGGU---------AGCUCU---------UGCGc -5'
29417 5' -53.3 NC_006151.1 + 130898 0.66 0.97153
Target:  5'- -aGGCGGCGGCCgucgCCGUCGucGGugGCc -3'
miRNA:   3'- agCUGCUGUUGG----GGUAGCu-CUugCGc -5'
29417 5' -53.3 NC_006151.1 + 17473 0.66 0.97153
Target:  5'- cCG-CGGCGuguCCUCGUCGGcGGCGCGc -3'
miRNA:   3'- aGCuGCUGUu--GGGGUAGCUcUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 25385 0.66 0.97153
Target:  5'- aCGGCGGCGgugguucucgACCgCGaCGGGGGCGCc -3'
miRNA:   3'- aGCUGCUGU----------UGGgGUaGCUCUUGCGc -5'
29417 5' -53.3 NC_006151.1 + 58324 0.66 0.968589
Target:  5'- gCGGCGGCGcgccgGCCUCcgCGuAGGcgcGCGCGa -3'
miRNA:   3'- aGCUGCUGU-----UGGGGuaGC-UCU---UGCGC- -5'
29417 5' -53.3 NC_006151.1 + 6234 0.66 0.968589
Target:  5'- gCGGCGcCGggagcccuggcuGCCgCCGUCGGGGccggACGCGa -3'
miRNA:   3'- aGCUGCuGU------------UGG-GGUAGCUCU----UGCGC- -5'
29417 5' -53.3 NC_006151.1 + 36456 0.66 0.968589
Target:  5'- cCGGCcccucGGCAGCCCCGcgGAGAugGUc -3'
miRNA:   3'- aGCUG-----CUGUUGGGGUagCUCUugCGc -5'
29417 5' -53.3 NC_006151.1 + 3969 0.66 0.968589
Target:  5'- cCGcGCGGCGGCCUCggCGAGccggcCGCGg -3'
miRNA:   3'- aGC-UGCUGUUGGGGuaGCUCuu---GCGC- -5'
29417 5' -53.3 NC_006151.1 + 105313 0.66 0.968589
Target:  5'- cCGAgGACGagGCCCCccuggcCGAGGcccGCGCGc -3'
miRNA:   3'- aGCUgCUGU--UGGGGua----GCUCU---UGCGC- -5'
29417 5' -53.3 NC_006151.1 + 124886 0.66 0.968589
Target:  5'- cCGAggaGAUGACCCgCGaCGAGAcGCGCGa -3'
miRNA:   3'- aGCUg--CUGUUGGG-GUaGCUCU-UGCGC- -5'
29417 5' -53.3 NC_006151.1 + 100813 0.66 0.967666
Target:  5'- gCGACGGCGaggcggGCCCCGacgccgugccgcucUCGGcGAGCGUc -3'
miRNA:   3'- aGCUGCUGU------UGGGGU--------------AGCU-CUUGCGc -5'
29417 5' -53.3 NC_006151.1 + 24294 0.66 0.966724
Target:  5'- -gGGCGGgAACUCCucggggugcacccCGAGGGCGCGg -3'
miRNA:   3'- agCUGCUgUUGGGGua-----------GCUCUUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.