miRNA display CGI


Results 21 - 40 of 203 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29418 3' -65.6 NC_006151.1 + 101558 0.66 0.508942
Target:  5'- cGGCGGaCGuGUacGCgcaCGUCGcGGGCUacgCCGCc -3'
miRNA:   3'- -CCGCC-GC-CA--CGa--GCAGC-CCCGG---GGCG- -5'
29418 3' -65.6 NC_006151.1 + 38395 0.66 0.506232
Target:  5'- cGGCGGCGGgcgcccccuccgGCcucccCGgcucCGGGcccuccaGCCCCGCc -3'
miRNA:   3'- -CCGCCGCCa-----------CGa----GCa---GCCC-------CGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 89129 0.66 0.499933
Target:  5'- gGGCGGCGGgaccggGggCGUCGaGaccGCgCCCGCc -3'
miRNA:   3'- -CCGCCGCCa-----CgaGCAGC-Cc--CG-GGGCG- -5'
29418 3' -65.6 NC_006151.1 + 84732 0.66 0.499933
Target:  5'- aGGCGcucGUGGUGCUCGaggagaCGGcGcGCgCCGCc -3'
miRNA:   3'- -CCGC---CGCCACGAGCa-----GCC-C-CGgGGCG- -5'
29418 3' -65.6 NC_006151.1 + 86320 0.66 0.499933
Target:  5'- uGGgGGCcGUGCUCGcccgcgcCGuGGGCCCgGa -3'
miRNA:   3'- -CCgCCGcCACGAGCa------GC-CCCGGGgCg -5'
29418 3' -65.6 NC_006151.1 + 130802 0.66 0.490995
Target:  5'- aGCuGGCGuacGCggCGUCcGGGUCCCGCu -3'
miRNA:   3'- cCG-CCGCca-CGa-GCAGcCCCGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 70954 0.66 0.490995
Target:  5'- -uCGGCGGUGCgcguggcCGUCGaGGGCaacaGCa -3'
miRNA:   3'- ccGCCGCCACGa------GCAGC-CCCGggg-CG- -5'
29418 3' -65.6 NC_006151.1 + 81748 0.66 0.490995
Target:  5'- aGGCGGCGcGgaGCUgGUccgCGGGcGCCaCCGg -3'
miRNA:   3'- -CCGCCGC-Ca-CGAgCA---GCCC-CGG-GGCg -5'
29418 3' -65.6 NC_006151.1 + 121783 0.66 0.490995
Target:  5'- cGCGGUGGUGCgCGagcuGGCCCCacGCg -3'
miRNA:   3'- cCGCCGCCACGaGCagccCCGGGG--CG- -5'
29418 3' -65.6 NC_006151.1 + 125216 0.66 0.490995
Target:  5'- cGGCccccGCGGccGCcCGUC-GGGCCCgGCg -3'
miRNA:   3'- -CCGc---CGCCa-CGaGCAGcCCCGGGgCG- -5'
29418 3' -65.6 NC_006151.1 + 78395 0.66 0.488328
Target:  5'- gGGCGGCcacGGcgGCUC-UCGGgccgcgagcgccguGGCCCaCGCc -3'
miRNA:   3'- -CCGCCG---CCa-CGAGcAGCC--------------CCGGG-GCG- -5'
29418 3' -65.6 NC_006151.1 + 115781 0.66 0.484783
Target:  5'- cGGCcuccucgGGCGc-GCUCGUCGGgaugcgcgcgcggauGGCCuuGCg -3'
miRNA:   3'- -CCG-------CCGCcaCGAGCAGCC---------------CCGGggCG- -5'
29418 3' -65.6 NC_006151.1 + 105037 0.66 0.482132
Target:  5'- aGGCGGCGcugcUGCUCGgcgccgucgaGGaGGCgCCCGa -3'
miRNA:   3'- -CCGCCGCc---ACGAGCag--------CC-CCG-GGGCg -5'
29418 3' -65.6 NC_006151.1 + 3005 0.66 0.482132
Target:  5'- gGGCguugaGGCGGccgaUGUCGGGGCgCCCGg -3'
miRNA:   3'- -CCG-----CCGCCacgaGCAGCCCCG-GGGCg -5'
29418 3' -65.6 NC_006151.1 + 135918 0.66 0.482132
Target:  5'- cGGCGGUcGUGCgcgCGcucugccgCGGGGagccCCUCGCg -3'
miRNA:   3'- -CCGCCGcCACGa--GCa-------GCCCC----GGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 121181 0.66 0.482132
Target:  5'- cGCGGCcGUGCUgcacgCGcUCGGGGCgCgCaCGCa -3'
miRNA:   3'- cCGCCGcCACGA-----GC-AGCCCCG-G-G-GCG- -5'
29418 3' -65.6 NC_006151.1 + 126101 0.66 0.478608
Target:  5'- cGGCGGCauGGUGUccuUCcuguccaaccccuUCGGGGCgCUCGCc -3'
miRNA:   3'- -CCGCCG--CCACG---AGc------------AGCCCCG-GGGCG- -5'
29418 3' -65.6 NC_006151.1 + 122691 0.66 0.473347
Target:  5'- cGGCGGCcguGGaGCUCGcgcucuucgggCGGcGGCCCgaGCa -3'
miRNA:   3'- -CCGCCG---CCaCGAGCa----------GCC-CCGGGg-CG- -5'
29418 3' -65.6 NC_006151.1 + 66869 0.66 0.473347
Target:  5'- gGGCGGCGcGaaggGCgCG-CccGGCCCCGCg -3'
miRNA:   3'- -CCGCCGC-Ca---CGaGCaGccCCGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 91572 0.66 0.470727
Target:  5'- uGGCGGCgcgcgcgugcuccaGGUGCUCGUCGcuGaGCaCCaGCa -3'
miRNA:   3'- -CCGCCG--------------CCACGAGCAGCc-C-CG-GGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.