Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29418 | 5' | -53.8 | NC_006151.1 | + | 49162 | 0.68 | 0.897069 |
Target: 5'- cUGGAG-GCCUGGGCGcgccgcgggGUGCUgcUGCUg -3' miRNA: 3'- uACCUCuUGGACCUGCa--------CAUGA--GCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 114532 | 0.68 | 0.897069 |
Target: 5'- -gGGAGAcCCgcGGACGacGUGCcCGCCg -3' miRNA: 3'- uaCCUCUuGGa-CCUGCa-CAUGaGCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 100871 | 0.68 | 0.882599 |
Target: 5'- cUGGGccgccguGAACCUGGAg--GUGCUgCGCCg -3' miRNA: 3'- uACCU-------CUUGGACCUgcaCAUGA-GCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 77611 | 0.68 | 0.879002 |
Target: 5'- cUGGAccucugcggccgcgcGGAgCUGGACGUGUACgaccccuaccUCGUCg -3' miRNA: 3'- uACCU---------------CUUgGACCUGCACAUG----------AGCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 89620 | 0.68 | 0.876083 |
Target: 5'- -cGcGAGGAUgaGGAgCGUGUGCgCGCCc -3' miRNA: 3'- uaC-CUCUUGgaCCU-GCACAUGaGCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 10990 | 0.68 | 0.876083 |
Target: 5'- gGUGGAGcgGGCCggGGGCcccgGCUCGCCc -3' miRNA: 3'- -UACCUC--UUGGa-CCUGcacaUGAGCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 69395 | 0.69 | 0.860951 |
Target: 5'- -cGGGGGuCCUgGGGCGUGagcaggaGCUCGUCg -3' miRNA: 3'- uaCCUCUuGGA-CCUGCACa------UGAGCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 140403 | 0.69 | 0.860951 |
Target: 5'- --cGAGGACCUGGGgG---ACUCGCCc -3' miRNA: 3'- uacCUCUUGGACCUgCacaUGAGCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 125541 | 0.69 | 0.85306 |
Target: 5'- cGUGGAGGugCgcgGcGGCGUGUACgUGCa -3' miRNA: 3'- -UACCUCUugGa--C-CUGCACAUGaGCGg -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 55817 | 0.69 | 0.843316 |
Target: 5'- -aGGAGGACCUGugcGGCGUGguguuuaagaagACgCGCCu -3' miRNA: 3'- uaCCUCUUGGAC---CUGCACa-----------UGaGCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 85333 | 0.7 | 0.819486 |
Target: 5'- cUGGAGGGCCacaGCGU--GCUCGCCg -3' miRNA: 3'- uACCUCUUGGaccUGCAcaUGAGCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 96752 | 0.7 | 0.819486 |
Target: 5'- -cGGAG-GCCaUGGcgGCGUGUGCUCGaCa -3' miRNA: 3'- uaCCUCuUGG-ACC--UGCACAUGAGCgG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 48935 | 0.7 | 0.801605 |
Target: 5'- -aGGAGGugCUgcccgcgcgcgaGGACGUGU--UCGCCu -3' miRNA: 3'- uaCCUCUugGA------------CCUGCACAugAGCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 19456 | 0.7 | 0.801605 |
Target: 5'- cUGGAGccgcggcACCUcGGGCGgcagGUAgUCGCCg -3' miRNA: 3'- uACCUCu------UGGA-CCUGCa---CAUgAGCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 109548 | 0.7 | 0.796112 |
Target: 5'- -cGGAGGcGCCgUGGACGUGgcccgagccgagggACUCuGCCg -3' miRNA: 3'- uaCCUCU-UGG-ACCUGCACa-------------UGAG-CGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 78656 | 0.71 | 0.773609 |
Target: 5'- gGUGGAGGcgGCCgGGGCGcggGUGCUggacgggcucuaCGCCg -3' miRNA: 3'- -UACCUCU--UGGaCCUGCa--CAUGA------------GCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 127337 | 0.73 | 0.662836 |
Target: 5'- -cGGGGGugCUGGuacACGUGgucgguCUCGCCc -3' miRNA: 3'- uaCCUCUugGACC---UGCACau----GAGCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 3401 | 0.77 | 0.432231 |
Target: 5'- -cGGAGGGCC-GcGGCGUGUGgguCUCGCCg -3' miRNA: 3'- uaCCUCUUGGaC-CUGCACAU---GAGCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 54710 | 0.77 | 0.414219 |
Target: 5'- cUGGgccAGGGCCUGGACGagGUggccgaGCUCGCCg -3' miRNA: 3'- uACC---UCUUGGACCUGCa-CA------UGAGCGG- -5' |
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29418 | 5' | -53.8 | NC_006151.1 | + | 8743 | 0.79 | 0.354971 |
Target: 5'- -aGGGGGguGCCcGGGCGUGU-CUCGCCu -3' miRNA: 3'- uaCCUCU--UGGaCCUGCACAuGAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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