miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29419 3' -55.3 NC_006151.1 + 105049 0.66 0.928569
Target:  5'- uGCUCGgcgcCGUCGAgGagGCGCCCgaGCUGg -3'
miRNA:   3'- cCGAGUa---GUAGCUgUg-CGUGGG--CGAC- -5'
29419 3' -55.3 NC_006151.1 + 132421 0.66 0.928569
Target:  5'- aGCUUGcccUCGUCGcgGCGCGCCUGCg- -3'
miRNA:   3'- cCGAGU---AGUAGCugUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 104992 0.66 0.928569
Target:  5'- cGCUCAaCAUCGACcgggcCGCcUCCGCg- -3'
miRNA:   3'- cCGAGUaGUAGCUGu----GCGuGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 72050 0.66 0.928569
Target:  5'- cGCgcagCGUCucggCGGCGCGCgccaccACCCGCg- -3'
miRNA:   3'- cCGa---GUAGua--GCUGUGCG------UGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 63756 0.66 0.928569
Target:  5'- cGGCggggCGUCcUCGGCGC-C-CCCGCg- -3'
miRNA:   3'- -CCGa---GUAGuAGCUGUGcGuGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 57723 0.66 0.923174
Target:  5'- cGGCUUgac--CG-CGCGCGCCCGCa- -3'
miRNA:   3'- -CCGAGuaguaGCuGUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 104357 0.66 0.923174
Target:  5'- cGCUCuUCGgcgcCGACACGgAgCCGCUc -3'
miRNA:   3'- cCGAGuAGUa---GCUGUGCgUgGGCGAc -5'
29419 3' -55.3 NC_006151.1 + 111113 0.66 0.927509
Target:  5'- uGGCUCGgcggggagcgcgCGUCuguGCGCGCcCCCGCg- -3'
miRNA:   3'- -CCGAGUa-----------GUAGc--UGUGCGuGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 128503 0.66 0.928569
Target:  5'- uGGCUCGUCA---GCACgaGCACCuCGCc- -3'
miRNA:   3'- -CCGAGUAGUagcUGUG--CGUGG-GCGac -5'
29419 3' -55.3 NC_006151.1 + 54431 0.66 0.928569
Target:  5'- cGGCgcuUCggCGACGagGCGCCCGCc- -3'
miRNA:   3'- -CCGaguAGuaGCUGUg-CGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 59504 0.66 0.928569
Target:  5'- cGGCggCcUCcgCGACGCGCGCgcagcgCCGCg- -3'
miRNA:   3'- -CCGa-GuAGuaGCUGUGCGUG------GGCGac -5'
29419 3' -55.3 NC_006151.1 + 140460 0.67 0.890584
Target:  5'- cGGCgggAUCAUgGACGCGCuggacucccacaaaACCgGCUGc -3'
miRNA:   3'- -CCGag-UAGUAgCUGUGCG--------------UGGgCGAC- -5'
29419 3' -55.3 NC_006151.1 + 105532 0.67 0.891934
Target:  5'- cGGCgcgCAUCGggcccgagcugCGGCACGaCGCCCugcgcgcGCUGg -3'
miRNA:   3'- -CCGa--GUAGUa----------GCUGUGC-GUGGG-------CGAC- -5'
29419 3' -55.3 NC_006151.1 + 23374 0.67 0.892606
Target:  5'- aGGCgcccUCGUCgGUCGAgGggaaGCACCCGCg- -3'
miRNA:   3'- -CCG----AGUAG-UAGCUgUg---CGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 67535 0.67 0.892606
Target:  5'- aGGCgccagccggCGUCGUUGAcCACcacgugGCGCCCGCg- -3'
miRNA:   3'- -CCGa--------GUAGUAGCU-GUG------CGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 74990 0.67 0.892606
Target:  5'- uGCgCggCAUCG-CGCGCACCUGCc- -3'
miRNA:   3'- cCGaGuaGUAGCuGUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 97476 0.67 0.899193
Target:  5'- cGGCUCAccgccaCGUgGACGCGCagcGCCuCGCg- -3'
miRNA:   3'- -CCGAGUa-----GUAgCUGUGCG---UGG-GCGac -5'
29419 3' -55.3 NC_006151.1 + 125115 0.67 0.899193
Target:  5'- gGGCU--UCGUgGugGCcuucCGCCCGCUGa -3'
miRNA:   3'- -CCGAguAGUAgCugUGc---GUGGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 135602 0.67 0.899193
Target:  5'- cGGCUCAUaagcccuccCA-CGGcCGCgGCGCCCGCa- -3'
miRNA:   3'- -CCGAGUA---------GUaGCU-GUG-CGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 113408 0.67 0.885787
Target:  5'- uGCUCA-CG-CG-CGCGCACUgGCUGg -3'
miRNA:   3'- cCGAGUaGUaGCuGUGCGUGGgCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.