miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29419 3' -55.3 NC_006151.1 + 62547 0.66 0.917538
Target:  5'- cGGC-CGgggCAaCGACGaGUACCUGCUGg -3'
miRNA:   3'- -CCGaGUa--GUaGCUGUgCGUGGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 101985 0.66 0.917538
Target:  5'- cGGC-CGUCG-CGcaaguuccgccCGCGCACCCGCg- -3'
miRNA:   3'- -CCGaGUAGUaGCu----------GUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 90955 0.66 0.91226
Target:  5'- gGGCUCcgucgcgccgaccgCGUCGACGCccugGCG-CCGCUGg -3'
miRNA:   3'- -CCGAGua------------GUAGCUGUG----CGUgGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 64264 0.66 0.911662
Target:  5'- cGCUC-UCGUUGACGCggccaaagaugaGCGCCgCGUUGu -3'
miRNA:   3'- cCGAGuAGUAGCUGUG------------CGUGG-GCGAC- -5'
29419 3' -55.3 NC_006151.1 + 116742 0.66 0.911662
Target:  5'- gGGgUCGUCcgaGUCG-CACGaGCCCGCg- -3'
miRNA:   3'- -CCgAGUAG---UAGCuGUGCgUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 86719 0.66 0.911662
Target:  5'- aGCUgGUCG-CGGCGCGC-CgCCGCg- -3'
miRNA:   3'- cCGAgUAGUaGCUGUGCGuG-GGCGac -5'
29419 3' -55.3 NC_006151.1 + 86370 0.66 0.911662
Target:  5'- cGGCUC-UCGgacgaggagCGGCugcUGUACCUGCUGa -3'
miRNA:   3'- -CCGAGuAGUa--------GCUGu--GCGUGGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 78925 0.66 0.911662
Target:  5'- -uCUCuGUCcgCGACACGCACacaCGCg- -3'
miRNA:   3'- ccGAG-UAGuaGCUGUGCGUGg--GCGac -5'
29419 3' -55.3 NC_006151.1 + 49001 0.66 0.905546
Target:  5'- aGGUggUCAUCAUCGGC-CaGgACCCGUa- -3'
miRNA:   3'- -CCG--AGUAGUAGCUGuG-CgUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 87153 0.66 0.905546
Target:  5'- aGCUCcgCuaccCGACgccguacuACGCGCCCGCg- -3'
miRNA:   3'- cCGAGuaGua--GCUG--------UGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 89132 0.66 0.905546
Target:  5'- cGGCgggacCGggggCGUCGAgAcCGCGCCCGCc- -3'
miRNA:   3'- -CCGa----GUa---GUAGCUgU-GCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 75589 0.67 0.901762
Target:  5'- aGGCg-GUCgccgacgacgacgagGUCGGCGCGCACgCGCg- -3'
miRNA:   3'- -CCGagUAG---------------UAGCUGUGCGUGgGCGac -5'
29419 3' -55.3 NC_006151.1 + 135602 0.67 0.899193
Target:  5'- cGGCUCAUaagcccuccCA-CGGcCGCgGCGCCCGCa- -3'
miRNA:   3'- -CCGAGUA---------GUaGCU-GUG-CGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 125115 0.67 0.899193
Target:  5'- gGGCU--UCGUgGugGCcuucCGCCCGCUGa -3'
miRNA:   3'- -CCGAguAGUAgCugUGc---GUGGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 97476 0.67 0.899193
Target:  5'- cGGCUCAccgccaCGUgGACGCGCagcGCCuCGCg- -3'
miRNA:   3'- -CCGAGUa-----GUAgCUGUGCG---UGG-GCGac -5'
29419 3' -55.3 NC_006151.1 + 23374 0.67 0.892606
Target:  5'- aGGCgcccUCGUCgGUCGAgGggaaGCACCCGCg- -3'
miRNA:   3'- -CCG----AGUAG-UAGCUgUg---CGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 67535 0.67 0.892606
Target:  5'- aGGCgccagccggCGUCGUUGAcCACcacgugGCGCCCGCg- -3'
miRNA:   3'- -CCGa--------GUAGUAGCU-GUG------CGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 74990 0.67 0.892606
Target:  5'- uGCgCggCAUCG-CGCGCACCUGCc- -3'
miRNA:   3'- cCGaGuaGUAGCuGUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 105532 0.67 0.891934
Target:  5'- cGGCgcgCAUCGggcccgagcugCGGCACGaCGCCCugcgcgcGCUGg -3'
miRNA:   3'- -CCGa--GUAGUa----------GCUGUGC-GUGGG-------CGAC- -5'
29419 3' -55.3 NC_006151.1 + 140460 0.67 0.890584
Target:  5'- cGGCgggAUCAUgGACGCGCuggacucccacaaaACCgGCUGc -3'
miRNA:   3'- -CCGag-UAGUAgCUGUGCG--------------UGGgCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.