miRNA display CGI


Results 21 - 40 of 197 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29419 5' -62.5 NC_006151.1 + 90100 0.66 0.616007
Target:  5'- -gCGccGCaGGCCGCGGcgacGCCCAU-GACGAg -3'
miRNA:   3'- caGC--UG-CCGGCGCC----CGGGUAcCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 82609 0.66 0.606239
Target:  5'- --gGugGGCCcgcgcGCGGGCgCCgcgGUGGGCGc -3'
miRNA:   3'- cagCugCCGG-----CGCCCG-GG---UACCUGCu -5'
29419 5' -62.5 NC_006151.1 + 14638 0.66 0.606239
Target:  5'- cGUCGggGCGGCCGggcuCGGGUCCGguuccgGGuCGGc -3'
miRNA:   3'- -CAGC--UGCCGGC----GCCCGGGUa-----CCuGCU- -5'
29419 5' -62.5 NC_006151.1 + 86331 0.66 0.596488
Target:  5'- cUCGccCGcGCCGUGGGCCCGgacuucuucggGGACa- -3'
miRNA:   3'- cAGCu-GC-CGGCGCCCGGGUa----------CCUGcu -5'
29419 5' -62.5 NC_006151.1 + 97244 0.66 0.596488
Target:  5'- gGUgGcGCGGCCGCgcaugucggGGGCCCAcacGGGCa- -3'
miRNA:   3'- -CAgC-UGCCGGCG---------CCCGGGUa--CCUGcu -5'
29419 5' -62.5 NC_006151.1 + 54643 0.66 0.596488
Target:  5'- -gCGGCGG-CGCGaGcGCUgCGUGGACGAg -3'
miRNA:   3'- caGCUGCCgGCGC-C-CGG-GUACCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 23987 0.66 0.596488
Target:  5'- -aCGACGG-UGCGGaccacgaggaGCCCGaGGGCGAg -3'
miRNA:   3'- caGCUGCCgGCGCC----------CGGGUaCCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 21492 0.66 0.595514
Target:  5'- --aGGCGGCCggggggcGCGGGCgucaCcgGGGCGGg -3'
miRNA:   3'- cagCUGCCGG-------CGCCCGg---GuaCCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 116594 0.67 0.586762
Target:  5'- --aGACGGUCGUGaGCUUgguGUGGACGAa -3'
miRNA:   3'- cagCUGCCGGCGCcCGGG---UACCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 22197 0.67 0.586762
Target:  5'- --aGACGuCCGCGGGgCCGacgaaGGGCGAg -3'
miRNA:   3'- cagCUGCcGGCGCCCgGGUa----CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 38305 0.67 0.586762
Target:  5'- -cCGcGCGGCC-CGGGCCCGcGGAg-- -3'
miRNA:   3'- caGC-UGCCGGcGCCCGGGUaCCUgcu -5'
29419 5' -62.5 NC_006151.1 + 48158 0.67 0.586762
Target:  5'- -cCGGC-GUCGCGGGaaaccCCCAUGGGCu- -3'
miRNA:   3'- caGCUGcCGGCGCCC-----GGGUACCUGcu -5'
29419 5' -62.5 NC_006151.1 + 50017 0.67 0.586762
Target:  5'- -gCGcGCGGCCcgcGCGGcGCCCccGGGCGc -3'
miRNA:   3'- caGC-UGCCGG---CGCC-CGGGuaCCUGCu -5'
29419 5' -62.5 NC_006151.1 + 81748 0.67 0.586762
Target:  5'- --aGGCGGCgcggagcuggucCGCGGGCgCCAccgGGACGc -3'
miRNA:   3'- cagCUGCCG------------GCGCCCG-GGUa--CCUGCu -5'
29419 5' -62.5 NC_006151.1 + 122378 0.67 0.586762
Target:  5'- cUCGACGaggcgcGCCGCGGGCgCGcgcUGG-CGGc -3'
miRNA:   3'- cAGCUGC------CGGCGCCCGgGU---ACCuGCU- -5'
29419 5' -62.5 NC_006151.1 + 4605 0.67 0.586762
Target:  5'- -cCG-UGGCCGUGGGgCgCGUGGACc- -3'
miRNA:   3'- caGCuGCCGGCGCCCgG-GUACCUGcu -5'
29419 5' -62.5 NC_006151.1 + 18668 0.67 0.586762
Target:  5'- cGUCGucCGGCCGUacGGGuUCCAcGGGCGc -3'
miRNA:   3'- -CAGCu-GCCGGCG--CCC-GGGUaCCUGCu -5'
29419 5' -62.5 NC_006151.1 + 30656 0.67 0.586762
Target:  5'- gGUUGAUGGCCGCGcuGGUUCcgGGAa-- -3'
miRNA:   3'- -CAGCUGCCGGCGC--CCGGGuaCCUgcu -5'
29419 5' -62.5 NC_006151.1 + 30811 0.67 0.586762
Target:  5'- -cCGGgGGCaCGCGGGCgggaggaguugCGUGGGCGGa -3'
miRNA:   3'- caGCUgCCG-GCGCCCGg----------GUACCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 36639 0.67 0.586762
Target:  5'- -cCGGCGGCgGCGGcGCCCccuccgccGGAgGGg -3'
miRNA:   3'- caGCUGCCGgCGCC-CGGGua------CCUgCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.