Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29420 | 3' | -58.2 | NC_006151.1 | + | 77928 | 0.66 | 0.772637 |
Target: 5'- ---gUGGUGGuGAAgGGCGggCGCGCg -3' miRNA: 3'- aaagACCACCuCUUgCCGCggGCGUG- -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 128259 | 0.66 | 0.772637 |
Target: 5'- ---gUGGUGGA-AGCGGCacuGCgCGCGCa -3' miRNA: 3'- aaagACCACCUcUUGCCG---CGgGCGUG- -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 106453 | 0.66 | 0.78198 |
Target: 5'- cUUCUcGGagacGGAGcuGugGGCGCCCuggGCGCa -3' miRNA: 3'- aAAGA-CCa---CCUC--UugCCGCGGG---CGUG- -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 110868 | 0.66 | 0.790273 |
Target: 5'- --gCUGGUGGcGAACaugggcuGGCGCUC-CACg -3' miRNA: 3'- aaaGACCACCuCUUG-------CCGCGGGcGUG- -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 5856 | 0.66 | 0.791187 |
Target: 5'- ----cGGaGGGGGACGaGCGCCCGgGg -3' miRNA: 3'- aaagaCCaCCUCUUGC-CGCGGGCgUg -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 90736 | 0.66 | 0.752616 |
Target: 5'- ----cGGUGGc-GGCGGCGCCCucgggggcggcggGCACg -3' miRNA: 3'- aaagaCCACCucUUGCCGCGGG-------------CGUG- -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 19878 | 0.66 | 0.752616 |
Target: 5'- ----cGGUGGAGAGCGccagggccagcaGCGCCaggagcugcgcggCGCGCa -3' miRNA: 3'- aaagaCCACCUCUUGC------------CGCGG-------------GCGUG- -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 31427 | 0.67 | 0.704217 |
Target: 5'- ----aGGgGGGGGACGGgGUgCGCGCg -3' miRNA: 3'- aaagaCCaCCUCUUGCCgCGgGCGUG- -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 31579 | 0.67 | 0.704217 |
Target: 5'- -aUCacg-GGGGGGCGGCGCgcuCCGCGCu -3' miRNA: 3'- aaAGaccaCCUCUUGCCGCG---GGCGUG- -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 70087 | 0.67 | 0.713249 |
Target: 5'- -gUCUGcgcGUGGGcggcgaagggcgcGAGCGGguccaCGCCCGCGCg -3' miRNA: 3'- aaAGAC---CACCU-------------CUUGCC-----GCGGGCGUG- -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 103665 | 0.67 | 0.714249 |
Target: 5'- ----cGGcGGAGAagGCGGCGCgCGCGg -3' miRNA: 3'- aaagaCCaCCUCU--UGCCGCGgGCGUg -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 63999 | 0.67 | 0.714249 |
Target: 5'- -gUCUGcGUGcGGuGCGGCGCCagGCGCc -3' miRNA: 3'- aaAGAC-CACcUCuUGCCGCGGg-CGUG- -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 20096 | 0.67 | 0.724211 |
Target: 5'- -aUCUugGGcUGGGGGACgGGCGCCCcgGCGa -3' miRNA: 3'- aaAGA--CC-ACCUCUUG-CCGCGGG--CGUg -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 86905 | 0.67 | 0.724211 |
Target: 5'- --gCUGGUGGucAACcaGCGCCCgGCGCc -3' miRNA: 3'- aaaGACCACCucUUGc-CGCGGG-CGUG- -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 139625 | 0.67 | 0.724211 |
Target: 5'- ----cGGcUGGGGGccaucCGGCGCCgGCGCg -3' miRNA: 3'- aaagaCC-ACCUCUu----GCCGCGGgCGUG- -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 95431 | 0.67 | 0.724211 |
Target: 5'- --gUUGGacgugGcGAGGGCGGCGCC-GCGCg -3' miRNA: 3'- aaaGACCa----C-CUCUUGCCGCGGgCGUG- -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 40557 | 0.67 | 0.734094 |
Target: 5'- ---gUGGUGGAagcGGcgGCGGCGgCCGCGg -3' miRNA: 3'- aaagACCACCU---CU--UGCCGCgGGCGUg -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 104901 | 0.67 | 0.734094 |
Target: 5'- ---gUGGUGGAc-GCGGCGgCgGCGCg -3' miRNA: 3'- aaagACCACCUcuUGCCGCgGgCGUG- -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 119759 | 0.67 | 0.743887 |
Target: 5'- -cUCUGGcGGAcguGGcCGGCGCgCGCAUc -3' miRNA: 3'- aaAGACCaCCU---CUuGCCGCGgGCGUG- -5' |
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29420 | 3' | -58.2 | NC_006151.1 | + | 31616 | 0.67 | 0.743887 |
Target: 5'- --cCUGGgcGGGGAuGCcGCGCCgGCACg -3' miRNA: 3'- aaaGACCa-CCUCU-UGcCGCGGgCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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