miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29420 5' -59.6 NC_006151.1 + 2916 0.74 0.341716
Target:  5'- gCCG-GCGCCG-CGCCGCGCcgagCcgCGAg -3'
miRNA:   3'- -GGCaCGCGGCaGCGGCGCGa---GaaGCU- -5'
29420 5' -59.6 NC_006151.1 + 3621 0.66 0.771939
Target:  5'- gCCGUG-GCCGUCcccgcggaggGCCGCGC-CggaGAg -3'
miRNA:   3'- -GGCACgCGGCAG----------CGGCGCGaGaagCU- -5'
29420 5' -59.6 NC_006151.1 + 11367 0.68 0.667104
Target:  5'- aCCGcGCGCUccgcUCGCCGC-CUCUUCc- -3'
miRNA:   3'- -GGCaCGCGGc---AGCGGCGcGAGAAGcu -5'
29420 5' -59.6 NC_006151.1 + 11928 0.66 0.78981
Target:  5'- ---cGCGCCGcCGCCGC-CUCcUCa- -3'
miRNA:   3'- ggcaCGCGGCaGCGGCGcGAGaAGcu -5'
29420 5' -59.6 NC_006151.1 + 15173 0.74 0.356737
Target:  5'- aCGcGCGCCcugCGCCGCGCccUCUUUGAc -3'
miRNA:   3'- gGCaCGCGGca-GCGGCGCG--AGAAGCU- -5'
29420 5' -59.6 NC_006151.1 + 17314 0.66 0.753603
Target:  5'- gCCGUcCGCCGgggggCGCCGCgucaGCUCgugcgucUCGGu -3'
miRNA:   3'- -GGCAcGCGGCa----GCGGCG----CGAGa------AGCU- -5'
29420 5' -59.6 NC_006151.1 + 19631 0.86 0.061764
Target:  5'- aCG-GCGCCGUCGCCGCGCgcgUCGAg -3'
miRNA:   3'- gGCaCGCGGCAGCGGCGCGagaAGCU- -5'
29420 5' -59.6 NC_006151.1 + 27221 0.68 0.686717
Target:  5'- cCCGcGCGCCGUgGaCGCGCaccUCcUCGGg -3'
miRNA:   3'- -GGCaCGCGGCAgCgGCGCG---AGaAGCU- -5'
29420 5' -59.6 NC_006151.1 + 32244 0.74 0.334379
Target:  5'- gCCGcgGCGaCCGcCGCCGcCGCUCU-CGAg -3'
miRNA:   3'- -GGCa-CGC-GGCaGCGGC-GCGAGAaGCU- -5'
29420 5' -59.6 NC_006151.1 + 37013 0.68 0.667104
Target:  5'- cCCGggccccCGCCGcCGCCGCGCggcgCU-CGGc -3'
miRNA:   3'- -GGCac----GCGGCaGCGGCGCGa---GAaGCU- -5'
29420 5' -59.6 NC_006151.1 + 39066 0.68 0.637506
Target:  5'- aCGUGCG-CGUgGUgGUGCUCUaCGAc -3'
miRNA:   3'- gGCACGCgGCAgCGgCGCGAGAaGCU- -5'
29420 5' -59.6 NC_006151.1 + 39467 0.7 0.530037
Target:  5'- gCCGUGCGCUGgcccgggUGCCGCgaGCUCcgcgCGGc -3'
miRNA:   3'- -GGCACGCGGCa------GCGGCG--CGAGaa--GCU- -5'
29420 5' -59.6 NC_006151.1 + 39963 0.74 0.327158
Target:  5'- cCCGgGCGCCGUCGCCGcCGCggg-CGc -3'
miRNA:   3'- -GGCaCGCGGCAGCGGC-GCGagaaGCu -5'
29420 5' -59.6 NC_006151.1 + 45212 0.67 0.696464
Target:  5'- -gGUGCGCCG-CGCuCGCGUUCc---- -3'
miRNA:   3'- ggCACGCGGCaGCG-GCGCGAGaagcu -5'
29420 5' -59.6 NC_006151.1 + 48511 0.66 0.761908
Target:  5'- gCCGUGCacaaggacucccuGCCGcCGCUGCGCUauaaUgGAg -3'
miRNA:   3'- -GGCACG-------------CGGCaGCGGCGCGAga--AgCU- -5'
29420 5' -59.6 NC_006151.1 + 48605 0.66 0.798551
Target:  5'- gUCGUGCcuGCCGcCGCCGC-CgCUUCu- -3'
miRNA:   3'- -GGCACG--CGGCaGCGGCGcGaGAAGcu -5'
29420 5' -59.6 NC_006151.1 + 49261 0.72 0.42987
Target:  5'- cUCGUgcGCGCCGUCGuCCaGCGgCUCUgCGAg -3'
miRNA:   3'- -GGCA--CGCGGCAGC-GG-CGC-GAGAaGCU- -5'
29420 5' -59.6 NC_006151.1 + 51430 0.68 0.66612
Target:  5'- uCCGUGgccaugaCGCgGaCGCCGCGCUCguacUCGc -3'
miRNA:   3'- -GGCAC-------GCGgCaGCGGCGCGAGa---AGCu -5'
29420 5' -59.6 NC_006151.1 + 51994 0.67 0.723462
Target:  5'- uCCGcgGUGCCGgcgugcagcuugCGCCGCGCcagCUccUCGGc -3'
miRNA:   3'- -GGCa-CGCGGCa-----------GCGGCGCGa--GA--AGCU- -5'
29420 5' -59.6 NC_006151.1 + 52042 0.68 0.647386
Target:  5'- gCCG-GCGCCGUCGCgUGCGUguagCccaCGAg -3'
miRNA:   3'- -GGCaCGCGGCAGCG-GCGCGa---Gaa-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.