miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29420 5' -59.6 NC_006151.1 + 84330 0.66 0.760069
Target:  5'- aCCGUGCGCggccucgccgaguaCGUCGCCG-GCccgCggCGGu -3'
miRNA:   3'- -GGCACGCG--------------GCAGCGGCgCGa--GaaGCU- -5'
29420 5' -59.6 NC_006151.1 + 60612 0.66 0.753603
Target:  5'- aCCGc-CGUCGUCGCCGcCGCcgUCgUCGGg -3'
miRNA:   3'- -GGCacGCGGCAGCGGC-GCG--AGaAGCU- -5'
29420 5' -59.6 NC_006151.1 + 17314 0.66 0.753603
Target:  5'- gCCGUcCGCCGgggggCGCCGCgucaGCUCgugcgucUCGGu -3'
miRNA:   3'- -GGCAcGCGGCa----GCGGCG----CGAGa------AGCU- -5'
29420 5' -59.6 NC_006151.1 + 86325 0.66 0.753603
Target:  5'- gCCGUGCucgcCCG-CGCCGUGggcccggacUUCUUCGGg -3'
miRNA:   3'- -GGCACGc---GGCaGCGGCGC---------GAGAAGCU- -5'
29420 5' -59.6 NC_006151.1 + 131233 0.66 0.753603
Target:  5'- gCGU-CGCCGUCgGCCGCcacguacaGCUCcccgUCGGa -3'
miRNA:   3'- gGCAcGCGGCAG-CGGCG--------CGAGa---AGCU- -5'
29420 5' -59.6 NC_006151.1 + 68839 0.66 0.753603
Target:  5'- gCGUGUGCuCGaggCGCCGCGCgacgCGu -3'
miRNA:   3'- gGCACGCG-GCa--GCGGCGCGagaaGCu -5'
29420 5' -59.6 NC_006151.1 + 69101 0.66 0.753603
Target:  5'- gCGUGcCGCCGcaccagcuccCGCCGCGcCUCcgCGGg -3'
miRNA:   3'- gGCAC-GCGGCa---------GCGGCGC-GAGaaGCU- -5'
29420 5' -59.6 NC_006151.1 + 99599 0.66 0.753603
Target:  5'- gCCGaGCGCCG-CGCCGgGCUgg-CGc -3'
miRNA:   3'- -GGCaCGCGGCaGCGGCgCGAgaaGCu -5'
29420 5' -59.6 NC_006151.1 + 136427 0.67 0.744281
Target:  5'- cCCGcgGCGgCGcaCGCCGCGCgCUacgUCGAc -3'
miRNA:   3'- -GGCa-CGCgGCa-GCGGCGCGaGA---AGCU- -5'
29420 5' -59.6 NC_006151.1 + 137299 0.67 0.744281
Target:  5'- gCCaUGCGCgGguucCGCCGCGCggugCU-CGAc -3'
miRNA:   3'- -GGcACGCGgCa---GCGGCGCGa---GAaGCU- -5'
29420 5' -59.6 NC_006151.1 + 104972 0.67 0.744281
Target:  5'- -gGUGaCGCCGcCGCCGgccuCGCUCaacaUCGAc -3'
miRNA:   3'- ggCAC-GCGGCaGCGGC----GCGAGa---AGCU- -5'
29420 5' -59.6 NC_006151.1 + 62288 0.67 0.734867
Target:  5'- gCGUGC-UCGUgGCCaGCGCggcCUUCGGc -3'
miRNA:   3'- gGCACGcGGCAgCGG-CGCGa--GAAGCU- -5'
29420 5' -59.6 NC_006151.1 + 121173 0.67 0.734867
Target:  5'- gCCGUGUacgcgGCCGUgcUGCaCGCGCUCggggCGc -3'
miRNA:   3'- -GGCACG-----CGGCA--GCG-GCGCGAGaa--GCu -5'
29420 5' -59.6 NC_006151.1 + 122209 0.67 0.734867
Target:  5'- cCCGgcGCaGCCGUgCGCgGUGUgCUUCGAg -3'
miRNA:   3'- -GGCa-CG-CGGCA-GCGgCGCGaGAAGCU- -5'
29420 5' -59.6 NC_006151.1 + 103996 0.67 0.733921
Target:  5'- gCCGUgGCgGCCGUggaggcgCGCCGCGCgg--CGGa -3'
miRNA:   3'- -GGCA-CG-CGGCA-------GCGGCGCGagaaGCU- -5'
29420 5' -59.6 NC_006151.1 + 136739 0.67 0.725371
Target:  5'- aCGUGaCGCCGagCGUCGCGCgCcUCGc -3'
miRNA:   3'- gGCAC-GCGGCa-GCGGCGCGaGaAGCu -5'
29420 5' -59.6 NC_006151.1 + 123853 0.67 0.725371
Target:  5'- gCGggGCGCCGUCGCgcuaGCGCUgCUg--- -3'
miRNA:   3'- gGCa-CGCGGCAGCGg---CGCGA-GAagcu -5'
29420 5' -59.6 NC_006151.1 + 69647 0.67 0.725371
Target:  5'- gCGUGCGgCGcCGCCGgGUcg-UCGAa -3'
miRNA:   3'- gGCACGCgGCaGCGGCgCGagaAGCU- -5'
29420 5' -59.6 NC_006151.1 + 51994 0.67 0.723462
Target:  5'- uCCGcgGUGCCGgcgugcagcuugCGCCGCGCcagCUccUCGGc -3'
miRNA:   3'- -GGCa-CGCGGCa-----------GCGGCGCGa--GA--AGCU- -5'
29420 5' -59.6 NC_006151.1 + 123080 0.67 0.719636
Target:  5'- gCCGgcgGCGCCuGuacgcggaccgccucUCGCgGCGCUCggCGGc -3'
miRNA:   3'- -GGCa--CGCGG-C---------------AGCGgCGCGAGaaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.