miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29421 3' -61.2 NC_006151.1 + 48590 0.66 0.680531
Target:  5'- cCCGGggugCGCCucGUCGUGCCUGcCGC-Cg -3'
miRNA:   3'- -GGUCaa--GCGG--CGGCACGGGC-GCGaGa -5'
29421 3' -61.2 NC_006151.1 + 101185 0.66 0.680531
Target:  5'- aCGGccgaCGCCGUggacgCGUGCCUGCGCg-- -3'
miRNA:   3'- gGUCaa--GCGGCG-----GCACGGGCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 25410 0.66 0.670733
Target:  5'- aCGGgggCGCCGCCGccCCaCGCGCg-- -3'
miRNA:   3'- gGUCaa-GCGGCGGCacGG-GCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 123337 0.66 0.670733
Target:  5'- aCGGUgcagCGCCaccCCGUGgacgCCGCGCUCc -3'
miRNA:   3'- gGUCAa---GCGGc--GGCACg---GGCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 37860 0.66 0.670733
Target:  5'- cCCGGgccgCGCCGCgGaccCCCGCGC-Cg -3'
miRNA:   3'- -GGUCaa--GCGGCGgCac-GGGCGCGaGa -5'
29421 3' -61.2 NC_006151.1 + 69329 0.66 0.670733
Target:  5'- gCGGgcgcgUCGCCGCCcgcgagcgcggcGUaGCCCGCGUcCa -3'
miRNA:   3'- gGUCa----AGCGGCGG------------CA-CGGGCGCGaGa -5'
29421 3' -61.2 NC_006151.1 + 134793 0.66 0.660906
Target:  5'- gCCuGUgagGCCGCgGcgGCCCGCGC-Cg -3'
miRNA:   3'- -GGuCAag-CGGCGgCa-CGGGCGCGaGa -5'
29421 3' -61.2 NC_006151.1 + 95444 0.66 0.660906
Target:  5'- -aGGgcggCGCCGCgCGUGUCCGUGUg-- -3'
miRNA:   3'- ggUCaa--GCGGCG-GCACGGGCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 73108 0.66 0.651057
Target:  5'- gCAccUCGCCGgCGgcgcGCCCGCGCg-- -3'
miRNA:   3'- gGUcaAGCGGCgGCa---CGGGCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 122682 0.66 0.651057
Target:  5'- -aGGUgcgCGCggcgGCCGUggaGCUCGCGCUCUu -3'
miRNA:   3'- ggUCAa--GCGg---CGGCA---CGGGCGCGAGA- -5'
29421 3' -61.2 NC_006151.1 + 83419 0.66 0.651057
Target:  5'- aCCAGgUUGCCGCCGgggggcucCCCGgGCa-- -3'
miRNA:   3'- -GGUCaAGCGGCGGCac------GGGCgCGaga -5'
29421 3' -61.2 NC_006151.1 + 97556 0.66 0.651057
Target:  5'- gCCGucgUCGCCGCCGaggcgcaGCUCGCGgUCc -3'
miRNA:   3'- -GGUca-AGCGGCGGCa------CGGGCGCgAGa -5'
29421 3' -61.2 NC_006151.1 + 113311 0.66 0.651057
Target:  5'- gCGGUggaCGCCacGCUGggGCCCGUGCUg- -3'
miRNA:   3'- gGUCAa--GCGG--CGGCa-CGGGCGCGAga -5'
29421 3' -61.2 NC_006151.1 + 109753 0.66 0.650071
Target:  5'- gCCGuGgcCGCCGCCGUuggaggcGCCCGCaccacccccgaGCUCc -3'
miRNA:   3'- -GGU-CaaGCGGCGGCA-------CGGGCG-----------CGAGa -5'
29421 3' -61.2 NC_006151.1 + 76110 0.66 0.649085
Target:  5'- aUCAGgacgCGCagcaucuggucgGCCGUG-CCGCGCUCg -3'
miRNA:   3'- -GGUCaa--GCGg-----------CGGCACgGGCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 58599 0.66 0.648099
Target:  5'- aCCAgGUUCGUgGCCGgGUCCGUcucgaagcgcagcgGCUCg -3'
miRNA:   3'- -GGU-CAAGCGgCGGCaCGGGCG--------------CGAGa -5'
29421 3' -61.2 NC_006151.1 + 24748 0.67 0.641194
Target:  5'- aCCAGgcaCGUCGCCGgGCCCcggGCGagcaUCUg -3'
miRNA:   3'- -GGUCaa-GCGGCGGCaCGGG---CGCg---AGA- -5'
29421 3' -61.2 NC_006151.1 + 61451 0.67 0.641194
Target:  5'- cCCGcGUcCGCCGCCauGUGCgggCCGCGCa-- -3'
miRNA:   3'- -GGU-CAaGCGGCGG--CACG---GGCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 48872 0.67 0.641194
Target:  5'- cCCgAGaUCGCCaaGCCGUacgcgcGCCUGCGCUg- -3'
miRNA:   3'- -GG-UCaAGCGG--CGGCA------CGGGCGCGAga -5'
29421 3' -61.2 NC_006151.1 + 80904 0.67 0.631324
Target:  5'- aUCAGggccuugacgUCGCCGCCGUGCa-GCGUc-- -3'
miRNA:   3'- -GGUCa---------AGCGGCGGCACGggCGCGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.