miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29421 5' -56.4 NC_006151.1 + 101678 1.08 0.003504
Target:  5'- gCGAGACGUACCUCGUGGACGAGCCGUa -3'
miRNA:   3'- -GCUCUGCAUGGAGCACCUGCUCGGCA- -5'
29421 5' -56.4 NC_006151.1 + 49437 0.77 0.357813
Target:  5'- aGAGgcgaacGCGUACCUCGUccaGACGGGCCGg -3'
miRNA:   3'- gCUC------UGCAUGGAGCAc--CUGCUCGGCa -5'
29421 5' -56.4 NC_006151.1 + 135961 0.75 0.432874
Target:  5'- gCGGGACGU-CCUCGaggccaUGGACGAGgCGg -3'
miRNA:   3'- -GCUCUGCAuGGAGC------ACCUGCUCgGCa -5'
29421 5' -56.4 NC_006151.1 + 89861 0.73 0.516333
Target:  5'- gCGGGACGgucGCCUCGUaGACGcGCCGc -3'
miRNA:   3'- -GCUCUGCa--UGGAGCAcCUGCuCGGCa -5'
29421 5' -56.4 NC_006151.1 + 6120 0.71 0.625734
Target:  5'- aCGGGGCG-GCCUCGUGGcuccggccGCG-GCCGc -3'
miRNA:   3'- -GCUCUGCaUGGAGCACC--------UGCuCGGCa -5'
29421 5' -56.4 NC_006151.1 + 79312 0.71 0.645953
Target:  5'- cCGGGACGgGCCUCcccggcgGGACG-GCCGg -3'
miRNA:   3'- -GCUCUGCaUGGAGca-----CCUGCuCGGCa -5'
29421 5' -56.4 NC_006151.1 + 65536 0.71 0.656051
Target:  5'- gCGucauGACG-GCCUCGUGGcCGaAGCCGg -3'
miRNA:   3'- -GCu---CUGCaUGGAGCACCuGC-UCGGCa -5'
29421 5' -56.4 NC_006151.1 + 65809 0.7 0.696173
Target:  5'- -cGGACGUGCCgcgGUGGAUGGGCgGc -3'
miRNA:   3'- gcUCUGCAUGGag-CACCUGCUCGgCa -5'
29421 5' -56.4 NC_006151.1 + 108738 0.7 0.696173
Target:  5'- gGAGACGgugGCC-CGgcugcGGauGCGAGCCGUg -3'
miRNA:   3'- gCUCUGCa--UGGaGCa----CC--UGCUCGGCA- -5'
29421 5' -56.4 NC_006151.1 + 98946 0.7 0.706094
Target:  5'- cCGAGGCGgcgcgGgC-CGUGGACGAGgCGg -3'
miRNA:   3'- -GCUCUGCa----UgGaGCACCUGCUCgGCa -5'
29421 5' -56.4 NC_006151.1 + 85409 0.7 0.706094
Target:  5'- uCGAcGGCGcggGCUUCGUGGACGAggucaaccgcGCCGc -3'
miRNA:   3'- -GCU-CUGCa--UGGAGCACCUGCU----------CGGCa -5'
29421 5' -56.4 NC_006151.1 + 123257 0.7 0.725744
Target:  5'- gCGAGgccgccgcgcgcGCGggcACCgUCGUGGACGAGCgCGa -3'
miRNA:   3'- -GCUC------------UGCa--UGG-AGCACCUGCUCG-GCa -5'
29421 5' -56.4 NC_006151.1 + 129450 0.7 0.725744
Target:  5'- gCGGGGCGcacgGCCgugggCG-GGACGAGCCc- -3'
miRNA:   3'- -GCUCUGCa---UGGa----GCaCCUGCUCGGca -5'
29421 5' -56.4 NC_006151.1 + 96912 0.69 0.745079
Target:  5'- gCGGGGCGggacaaGCCg---GGACGGGCCGg -3'
miRNA:   3'- -GCUCUGCa-----UGGagcaCCUGCUCGGCa -5'
29421 5' -56.4 NC_006151.1 + 56651 0.68 0.791572
Target:  5'- cCGAGGCcguGUACCgcugGUGGACGAcggcGCCGc -3'
miRNA:   3'- -GCUCUG---CAUGGag--CACCUGCU----CGGCa -5'
29421 5' -56.4 NC_006151.1 + 123988 0.68 0.791572
Target:  5'- gGAGGCGUcCCUCGaGGAgauCGAGgCGUu -3'
miRNA:   3'- gCUCUGCAuGGAGCaCCU---GCUCgGCA- -5'
29421 5' -56.4 NC_006151.1 + 97931 0.68 0.800485
Target:  5'- cCGAGGCcgcgcccgcCCUCGUcgaGGGCGAGCCa- -3'
miRNA:   3'- -GCUCUGcau------GGAGCA---CCUGCUCGGca -5'
29421 5' -56.4 NC_006151.1 + 53305 0.68 0.800485
Target:  5'- gCGAGucCGU-CUgCGUGGGCGAGCCc- -3'
miRNA:   3'- -GCUCu-GCAuGGaGCACCUGCUCGGca -5'
29421 5' -56.4 NC_006151.1 + 77561 0.68 0.809248
Target:  5'- gCGAcGACGU-CUUCGUGGACGcccuggGGCUGc -3'
miRNA:   3'- -GCU-CUGCAuGGAGCACCUGC------UCGGCa -5'
29421 5' -56.4 NC_006151.1 + 1952 0.68 0.817855
Target:  5'- gGAGAaggGCCUCGaggagccggUGGAgGGGCCGg -3'
miRNA:   3'- gCUCUgcaUGGAGC---------ACCUgCUCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.