Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29421 | 5' | -56.4 | NC_006151.1 | + | 55149 | 0.68 | 0.834567 |
Target: 5'- gGAGACgGUGCgCUCGUaccucGACGAGaCCGg -3' miRNA: 3'- gCUCUG-CAUG-GAGCAc----CUGCUC-GGCa -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 72868 | 0.68 | 0.834567 |
Target: 5'- gCGAGGCGgcggcGCC-CGUGucggcGAUGAGCCGc -3' miRNA: 3'- -GCUCUGCa----UGGaGCAC-----CUGCUCGGCa -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 101199 | 0.68 | 0.832105 |
Target: 5'- gGAcGCGUGCCUgcgcgagggccaggCGUGGACGGGgcCCGg -3' miRNA: 3'- gCUcUGCAUGGA--------------GCACCUGCUC--GGCa -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 114526 | 0.68 | 0.825461 |
Target: 5'- gGAGACGggagACC-CGcGGACGAcgugcccGCCGUc -3' miRNA: 3'- gCUCUGCa---UGGaGCaCCUGCU-------CGGCA- -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 21517 | 0.68 | 0.817855 |
Target: 5'- cCGGGGCGggcucggGCUUCGgccgGGGCcgGGGCCGg -3' miRNA: 3'- -GCUCUGCa------UGGAGCa---CCUG--CUCGGCa -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 1952 | 0.68 | 0.817855 |
Target: 5'- gGAGAaggGCCUCGaggagccggUGGAgGGGCCGg -3' miRNA: 3'- gCUCUgcaUGGAGC---------ACCUgCUCGGCa -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 77561 | 0.68 | 0.809248 |
Target: 5'- gCGAcGACGU-CUUCGUGGACGcccuggGGCUGc -3' miRNA: 3'- -GCU-CUGCAuGGAGCACCUGC------UCGGCa -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 97931 | 0.68 | 0.800485 |
Target: 5'- cCGAGGCcgcgcccgcCCUCGUcgaGGGCGAGCCa- -3' miRNA: 3'- -GCUCUGcau------GGAGCA---CCUGCUCGGca -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 53305 | 0.68 | 0.800485 |
Target: 5'- gCGAGucCGU-CUgCGUGGGCGAGCCc- -3' miRNA: 3'- -GCUCu-GCAuGGaGCACCUGCUCGGca -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 123988 | 0.68 | 0.791572 |
Target: 5'- gGAGGCGUcCCUCGaGGAgauCGAGgCGUu -3' miRNA: 3'- gCUCUGCAuGGAGCaCCU---GCUCgGCA- -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 56651 | 0.68 | 0.791572 |
Target: 5'- cCGAGGCcguGUACCgcugGUGGACGAcggcGCCGc -3' miRNA: 3'- -GCUCUG---CAUGGag--CACCUGCU----CGGCa -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 96912 | 0.69 | 0.745079 |
Target: 5'- gCGGGGCGggacaaGCCg---GGACGGGCCGg -3' miRNA: 3'- -GCUCUGCa-----UGGagcaCCUGCUCGGCa -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 123257 | 0.7 | 0.725744 |
Target: 5'- gCGAGgccgccgcgcgcGCGggcACCgUCGUGGACGAGCgCGa -3' miRNA: 3'- -GCUC------------UGCa--UGG-AGCACCUGCUCG-GCa -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 129450 | 0.7 | 0.725744 |
Target: 5'- gCGGGGCGcacgGCCgugggCG-GGACGAGCCc- -3' miRNA: 3'- -GCUCUGCa---UGGa----GCaCCUGCUCGGca -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 98946 | 0.7 | 0.706094 |
Target: 5'- cCGAGGCGgcgcgGgC-CGUGGACGAGgCGg -3' miRNA: 3'- -GCUCUGCa----UgGaGCACCUGCUCgGCa -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 85409 | 0.7 | 0.706094 |
Target: 5'- uCGAcGGCGcggGCUUCGUGGACGAggucaaccgcGCCGc -3' miRNA: 3'- -GCU-CUGCa--UGGAGCACCUGCU----------CGGCa -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 108738 | 0.7 | 0.696173 |
Target: 5'- gGAGACGgugGCC-CGgcugcGGauGCGAGCCGUg -3' miRNA: 3'- gCUCUGCa--UGGaGCa----CC--UGCUCGGCA- -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 65809 | 0.7 | 0.696173 |
Target: 5'- -cGGACGUGCCgcgGUGGAUGGGCgGc -3' miRNA: 3'- gcUCUGCAUGGag-CACCUGCUCGgCa -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 65536 | 0.71 | 0.656051 |
Target: 5'- gCGucauGACG-GCCUCGUGGcCGaAGCCGg -3' miRNA: 3'- -GCu---CUGCaUGGAGCACCuGC-UCGGCa -5' |
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29421 | 5' | -56.4 | NC_006151.1 | + | 79312 | 0.71 | 0.645953 |
Target: 5'- cCGGGACGgGCCUCcccggcgGGACG-GCCGg -3' miRNA: 3'- -GCUCUGCaUGGAGca-----CCUGCuCGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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