Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29422 | 3' | -56.2 | NC_006151.1 | + | 96853 | 0.66 | 0.912495 |
Target: 5'- gCGGGGaaAcCGCGC-CCGC-CGGGCGc -3' miRNA: 3'- -GCUCCagUuGUGCGuGGCGaGCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 65647 | 0.66 | 0.912495 |
Target: 5'- uGAGGUCGAggguCGCGUACUGCaggUCGuccGGCAc -3' miRNA: 3'- gCUCCAGUU----GUGCGUGGCG---AGC---CUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 55409 | 0.66 | 0.912495 |
Target: 5'- gCGAGca-GGCccuGCGCGCCGCgcaggCGGGCGc -3' miRNA: 3'- -GCUCcagUUG---UGCGUGGCGa----GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 141559 | 0.66 | 0.912495 |
Target: 5'- aGAGGgucCGGCGCGauccucCGCCGCUccucccccCGGGCGa -3' miRNA: 3'- gCUCCa--GUUGUGC------GUGGCGA--------GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 138730 | 0.66 | 0.910712 |
Target: 5'- -cGGGUCGuguACGCGCGCCGCgacugCcgcgccuaccugugGGACGu -3' miRNA: 3'- gcUCCAGU---UGUGCGUGGCGa----G--------------CCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 122921 | 0.66 | 0.910712 |
Target: 5'- uCGAGGgcggcgaCGACGCggacgccgacggcgGCGCCGCggggggcgCGGACGc -3' miRNA: 3'- -GCUCCa------GUUGUG--------------CGUGGCGa-------GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 53627 | 0.66 | 0.910113 |
Target: 5'- -cAGGUCGcgcuucugcagcuCGCGCACCGUcggCGGGCu -3' miRNA: 3'- gcUCCAGUu------------GUGCGUGGCGa--GCCUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 128420 | 0.66 | 0.906469 |
Target: 5'- uGAGG-CcGCACaCGCCGCUCuuccaGGGCGu -3' miRNA: 3'- gCUCCaGuUGUGcGUGGCGAG-----CCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 5620 | 0.66 | 0.906469 |
Target: 5'- gGAGGgggCGcCGC-CGCCGC-CGGGCGc -3' miRNA: 3'- gCUCCa--GUuGUGcGUGGCGaGCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 57232 | 0.66 | 0.906469 |
Target: 5'- uCGcAGG-CGGCGCGCGCgGcCUCGG-CGu -3' miRNA: 3'- -GC-UCCaGUUGUGCGUGgC-GAGCCuGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 123002 | 0.66 | 0.906469 |
Target: 5'- aCGGGccCGGCGCGCccCCGCcggCGGACGc -3' miRNA: 3'- -GCUCcaGUUGUGCGu-GGCGa--GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 33935 | 0.66 | 0.906469 |
Target: 5'- uCGAGGcCcGCGCGCcCCggggGCUCGGGg- -3' miRNA: 3'- -GCUCCaGuUGUGCGuGG----CGAGCCUgu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 71072 | 0.66 | 0.906469 |
Target: 5'- cCGuGGUCuucuaccacCACgGCGCCGCgggcgCGGGCGc -3' miRNA: 3'- -GCuCCAGuu-------GUG-CGUGGCGa----GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 122373 | 0.66 | 0.906469 |
Target: 5'- aCGGGcUCGACgagGCGCGCCGC--GGGCGc -3' miRNA: 3'- -GCUCcAGUUG---UGCGUGGCGagCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 118439 | 0.67 | 0.872904 |
Target: 5'- gGAGGUguGCGCGCggcucgGCCugGCcgCGGACGc -3' miRNA: 3'- gCUCCAguUGUGCG------UGG--CGa-GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 40148 | 0.67 | 0.872904 |
Target: 5'- gCGAcGGcCGGCccCGCGgcCCGCUCGGGCc -3' miRNA: 3'- -GCU-CCaGUUGu-GCGU--GGCGAGCCUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 82927 | 0.67 | 0.872904 |
Target: 5'- -aAGG-CGcACACGCACUGC-CGGAUg -3' miRNA: 3'- gcUCCaGU-UGUGCGUGGCGaGCCUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 123257 | 0.67 | 0.872904 |
Target: 5'- gCGAGGcCGccgcgcgcGCGgGCACCGUcgUGGACGa -3' miRNA: 3'- -GCUCCaGU--------UGUgCGUGGCGa-GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 127228 | 0.67 | 0.872904 |
Target: 5'- gCGGGGcCGucACACGCGCCaGCUCuugcGGCGc -3' miRNA: 3'- -GCUCCaGU--UGUGCGUGG-CGAGc---CUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 61647 | 0.67 | 0.872904 |
Target: 5'- gCGGcGuGUgGACGCGCcaGCCGCUCGuGGCc -3' miRNA: 3'- -GCU-C-CAgUUGUGCG--UGGCGAGC-CUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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