Results 41 - 60 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29422 | 3' | -56.2 | NC_006151.1 | + | 8117 | 0.67 | 0.834013 |
Target: 5'- gGGGGUCGGaGCGCGgaccCCGCcCGGugGg -3' miRNA: 3'- gCUCCAGUUgUGCGU----GGCGaGCCugU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 122679 | 0.67 | 0.831527 |
Target: 5'- cCGAGGU--GCGCGCggcgGCCGUggagcucgcgcucuUCGGGCGg -3' miRNA: 3'- -GCUCCAguUGUGCG----UGGCG--------------AGCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 45071 | 0.67 | 0.86553 |
Target: 5'- aCGGcuGGagAGCGCGCACCGCgCGGugugGCGu -3' miRNA: 3'- -GCU--CCagUUGUGCGUGGCGaGCC----UGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 85706 | 0.67 | 0.86553 |
Target: 5'- aCGucGUCGugGCcUACCGCgCGGACGa -3' miRNA: 3'- -GCucCAGUugUGcGUGGCGaGCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 26349 | 0.67 | 0.86553 |
Target: 5'- aCGGGG-CGGCgGCGgGCCGCgUCGGGg- -3' miRNA: 3'- -GCUCCaGUUG-UGCgUGGCG-AGCCUgu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 26966 | 0.67 | 0.875793 |
Target: 5'- uGAGcucgcgCAGCGCGCugCGCagcggggcgcucugcUCGGGCGa -3' miRNA: 3'- gCUCca----GUUGUGCGugGCG---------------AGCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 127228 | 0.67 | 0.872904 |
Target: 5'- gCGGGGcCGucACACGCGCCaGCUCuugcGGCGc -3' miRNA: 3'- -GCUCCaGU--UGUGCGUGG-CGAGc---CUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 123257 | 0.67 | 0.872904 |
Target: 5'- gCGAGGcCGccgcgcgcGCGgGCACCGUcgUGGACGa -3' miRNA: 3'- -GCUCCaGU--------UGUgCGUGGCGa-GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 82927 | 0.67 | 0.872904 |
Target: 5'- -aAGG-CGcACACGCACUGC-CGGAUg -3' miRNA: 3'- gcUCCaGU-UGUGCGUGGCGaGCCUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 40148 | 0.67 | 0.872904 |
Target: 5'- gCGAcGGcCGGCccCGCGgcCCGCUCGGGCc -3' miRNA: 3'- -GCU-CCaGUUGu-GCGU--GGCGAGCCUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 118439 | 0.67 | 0.872904 |
Target: 5'- gGAGGUguGCGCGCggcucgGCCugGCcgCGGACGc -3' miRNA: 3'- gCUCCAguUGUGCG------UGG--CGa-GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 61647 | 0.67 | 0.872904 |
Target: 5'- gCGGcGuGUgGACGCGCcaGCCGCUCGuGGCc -3' miRNA: 3'- -GCU-C-CAgUUGUGCG--UGGCGAGC-CUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 2313 | 0.67 | 0.872176 |
Target: 5'- cCGGGGUCAGCACcagcgggGCGgCCucgGCgUCGGGCu -3' miRNA: 3'- -GCUCCAGUUGUG-------CGU-GG---CG-AGCCUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 67870 | 0.68 | 0.80844 |
Target: 5'- cCGAGGUgGcGCGCGCGCCaGCccgCgGGGCAc -3' miRNA: 3'- -GCUCCAgU-UGUGCGUGG-CGa--G-CCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 130263 | 0.68 | 0.817134 |
Target: 5'- aGAGGcCGGCGCGCGgccCCGaggccgCGGGCGc -3' miRNA: 3'- gCUCCaGUUGUGCGU---GGCga----GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 81429 | 0.68 | 0.817134 |
Target: 5'- cCGAGGUCGcgGCgcagcgagacgGCGCACgGCgagaGGACGu -3' miRNA: 3'- -GCUCCAGU--UG-----------UGCGUGgCGag--CCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 63790 | 0.68 | 0.825661 |
Target: 5'- gCGGGGUCGGCcgucgccaGCGCcUCGC-CGGGCc -3' miRNA: 3'- -GCUCCAGUUG--------UGCGuGGCGaGCCUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 84573 | 0.68 | 0.825661 |
Target: 5'- gCGAGGgccUCGACGCGCGCCucgcGCUgGcGCAc -3' miRNA: 3'- -GCUCC---AGUUGUGCGUGG----CGAgCcUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 10917 | 0.68 | 0.825661 |
Target: 5'- cCGGGGUCGGgccCACgGCGCCGagggUGGGCGc -3' miRNA: 3'- -GCUCCAGUU---GUG-CGUGGCga--GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 70653 | 0.68 | 0.80844 |
Target: 5'- gCGAGG-CGcccguccucACGCGCGCCGC-CGG-CGa -3' miRNA: 3'- -GCUCCaGU---------UGUGCGUGGCGaGCCuGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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