miRNA display CGI


Results 101 - 120 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 2116 0.71 0.623171
Target:  5'- gCGGGGcCGGC-CGuCGCCGCcgCGGACGc -3'
miRNA:   3'- -GCUCCaGUUGuGC-GUGGCGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 81908 0.71 0.653749
Target:  5'- --cGGUCGcgGCGCGCCGCcUCGGAgAa -3'
miRNA:   3'- gcuCCAGUugUGCGUGGCG-AGCCUgU- -5'
29422 3' -56.2 NC_006151.1 + 95994 0.71 0.66087
Target:  5'- gGGGGcCAccucguccgugaugGCGCGCACCGCcuccUCGGugGu -3'
miRNA:   3'- gCUCCaGU--------------UGUGCGUGGCG----AGCCugU- -5'
29422 3' -56.2 NC_006151.1 + 31582 0.71 0.662902
Target:  5'- aCGGGGgggCGGCGCGCuccgcgcucccccGCCGCcUGGGCGg -3'
miRNA:   3'- -GCUCCa--GUUGUGCG-------------UGGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 64462 0.71 0.663918
Target:  5'- gGAuGG-CGGCGCGCGCCGC-CGcGGCGg -3'
miRNA:   3'- gCU-CCaGUUGUGCGUGGCGaGC-CUGU- -5'
29422 3' -56.2 NC_006151.1 + 102335 0.71 0.663918
Target:  5'- gGAGG-C-GCGCGCGCUGCU-GGACGu -3'
miRNA:   3'- gCUCCaGuUGUGCGUGGCGAgCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 5736 0.71 0.663918
Target:  5'- cCGGGGUCcgaGGC-CGCGCCGCcggccCGGGCu -3'
miRNA:   3'- -GCUCCAG---UUGuGCGUGGCGa----GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 20148 0.72 0.582528
Target:  5'- gCGGGGgCGGCGCGUggACCGC-CGGGCc -3'
miRNA:   3'- -GCUCCaGUUGUGCG--UGGCGaGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 123680 0.72 0.592653
Target:  5'- uCGAGGUCcuccGCGCGgAUCGCUucgcCGGACGc -3'
miRNA:   3'- -GCUCCAGu---UGUGCgUGGCGA----GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 15387 0.72 0.602807
Target:  5'- gCGAcGUCGACgaggACGaCGCCgGCUCGGACAc -3'
miRNA:   3'- -GCUcCAGUUG----UGC-GUGG-CGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 125866 0.73 0.512993
Target:  5'- uCGAGGUguACACGCGCgaggaGCUCGccGACAc -3'
miRNA:   3'- -GCUCCAguUGUGCGUGg----CGAGC--CUGU- -5'
29422 3' -56.2 NC_006151.1 + 98991 0.73 0.522742
Target:  5'- gCGAGGUCAACGCcaCGCCGCgcaCGGcCGu -3'
miRNA:   3'- -GCUCCAGUUGUGc-GUGGCGa--GCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 67461 0.73 0.522742
Target:  5'- gGGGGUCGcagaGCGCGCGCaGCagCGGGCAc -3'
miRNA:   3'- gCUCCAGU----UGUGCGUGgCGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 3694 0.73 0.532562
Target:  5'- cCGGGcGcgCGGCGCuucuucuuGCGCCGCUCGGGCGc -3'
miRNA:   3'- -GCUC-Ca-GUUGUG--------CGUGGCGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 57190 0.73 0.532562
Target:  5'- uCGGGGUCGugGCGCGaggcgaaggcCCGCUC-GACGa -3'
miRNA:   3'- -GCUCCAGUugUGCGU----------GGCGAGcCUGU- -5'
29422 3' -56.2 NC_006151.1 + 21465 0.73 0.542447
Target:  5'- gCGuGGUCc-CGCGuCGCCgGCUCGGGCAg -3'
miRNA:   3'- -GCuCCAGuuGUGC-GUGG-CGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 64554 0.74 0.493726
Target:  5'- gCGAGGcCGugGCGCGCCaGCUC-GACGa -3'
miRNA:   3'- -GCUCCaGUugUGCGUGG-CGAGcCUGU- -5'
29422 3' -56.2 NC_006151.1 + 118363 0.74 0.465468
Target:  5'- gCGAGG-CGGCGCGCGCCcGCUuCGGGu- -3'
miRNA:   3'- -GCUCCaGUUGUGCGUGG-CGA-GCCUgu -5'
29422 3' -56.2 NC_006151.1 + 73599 0.75 0.429149
Target:  5'- cCGGGGUgCAGCugGCGCCGCagcUGGugGg -3'
miRNA:   3'- -GCUCCA-GUUGugCGUGGCGa--GCCugU- -5'
29422 3' -56.2 NC_006151.1 + 57490 0.75 0.429149
Target:  5'- uCGcAGG-CGACGCGCACgCGCUCGGccGCGg -3'
miRNA:   3'- -GC-UCCaGUUGUGCGUG-GCGAGCC--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.