miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 86654 0.7 0.694238
Target:  5'- gGAGGcgcUCAcGCGCGCGCUGCUCucGACGg -3'
miRNA:   3'- gCUCC---AGU-UGUGCGUGGCGAGc-CUGU- -5'
29422 3' -56.2 NC_006151.1 + 82656 0.69 0.762761
Target:  5'- gCGAGGgCGGCccacccugcgGCGCGCCGCgggcgaGGGCGg -3'
miRNA:   3'- -GCUCCaGUUG----------UGCGUGGCGag----CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 89983 0.69 0.772162
Target:  5'- aCGuAGGU--GCACGUGCCGCgcaggcugCGGGCGa -3'
miRNA:   3'- -GC-UCCAguUGUGCGUGGCGa-------GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 88604 0.69 0.772162
Target:  5'- aGAGGacgggCGGCGCGCucagGCCGaaCUCGGGCu -3'
miRNA:   3'- gCUCCa----GUUGUGCG----UGGC--GAGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 104028 0.69 0.743621
Target:  5'- gGAGGUgGAgCGCGCGCagcgccaGCUCuGGGCGc -3'
miRNA:   3'- gCUCCAgUU-GUGCGUGg------CGAG-CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 105334 0.69 0.753244
Target:  5'- cCGAGGcCcGCGCGCGCgCGCUgCaGACGg -3'
miRNA:   3'- -GCUCCaGuUGUGCGUG-GCGA-GcCUGU- -5'
29422 3' -56.2 NC_006151.1 + 98208 0.69 0.732925
Target:  5'- gCGGGGUCGAgUGCGCGgcggcgcCCGCgcgCGGACc -3'
miRNA:   3'- -GCUCCAGUU-GUGCGU-------GGCGa--GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 66545 0.69 0.772162
Target:  5'- uCGGGGgcgcgcgCGGC-CGCGCCGCcgUGGACc -3'
miRNA:   3'- -GCUCCa------GUUGuGCGUGGCGa-GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 101951 0.69 0.772162
Target:  5'- gGAGGaccugagCAGCACGCACaCGgUCGG-CGg -3'
miRNA:   3'- gCUCCa------GUUGUGCGUG-GCgAGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 38084 0.69 0.772162
Target:  5'- gGAGGUgaCGGC-CGCGCUGCUCGcGCu -3'
miRNA:   3'- gCUCCA--GUUGuGCGUGGCGAGCcUGu -5'
29422 3' -56.2 NC_006151.1 + 113216 0.69 0.762761
Target:  5'- cCGAGG--AGCGCcgGCACCGCgccgUGGACGa -3'
miRNA:   3'- -GCUCCagUUGUG--CGUGGCGa---GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 139652 0.69 0.733902
Target:  5'- gGGGGUCGcgGCggGCGCGCCGC-CcGACAg -3'
miRNA:   3'- gCUCCAGU--UG--UGCGUGGCGaGcCUGU- -5'
29422 3' -56.2 NC_006151.1 + 49220 0.69 0.743621
Target:  5'- gCGGGGUCcccggcuccCACGCcCCGCUCGGcuggGCGc -3'
miRNA:   3'- -GCUCCAGuu-------GUGCGuGGCGAGCC----UGU- -5'
29422 3' -56.2 NC_006151.1 + 67870 0.68 0.80844
Target:  5'- cCGAGGUgGcGCGCGCGCCaGCccgCgGGGCAc -3'
miRNA:   3'- -GCUCCAgU-UGUGCGUGG-CGa--G-CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 130263 0.68 0.817134
Target:  5'- aGAGGcCGGCGCGCGgccCCGaggccgCGGGCGc -3'
miRNA:   3'- gCUCCaGUUGUGCGU---GGCga----GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 81429 0.68 0.817134
Target:  5'- cCGAGGUCGcgGCgcagcgagacgGCGCACgGCgagaGGACGu -3'
miRNA:   3'- -GCUCCAGU--UG-----------UGCGUGgCGag--CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 63790 0.68 0.825661
Target:  5'- gCGGGGUCGGCcgucgccaGCGCcUCGC-CGGGCc -3'
miRNA:   3'- -GCUCCAGUUG--------UGCGuGGCGaGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 84573 0.68 0.825661
Target:  5'- gCGAGGgccUCGACGCGCGCCucgcGCUgGcGCAc -3'
miRNA:   3'- -GCUCC---AGUUGUGCGUGG----CGAgCcUGU- -5'
29422 3' -56.2 NC_006151.1 + 10917 0.68 0.825661
Target:  5'- cCGGGGUCGGgccCACgGCGCCGagggUGGGCGc -3'
miRNA:   3'- -GCUCCAGUU---GUG-CGUGGCga--GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 86722 0.68 0.829023
Target:  5'- --uGGUCGcgGCGCGcCGCCGCgaggccggcgugcgCGGACAc -3'
miRNA:   3'- gcuCCAGU--UGUGC-GUGGCGa-------------GCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.