miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 112600 0.68 0.790584
Target:  5'- gGAGGcCGcCGCgGCGCCGCUggcgcUGGACGa -3'
miRNA:   3'- gCUCCaGUuGUG-CGUGGCGA-----GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 97316 0.68 0.790584
Target:  5'- -cGGG-CAGCGCGCGCUGCgCGGGu- -3'
miRNA:   3'- gcUCCaGUUGUGCGUGGCGaGCCUgu -5'
29422 3' -56.2 NC_006151.1 + 1845 0.68 0.799587
Target:  5'- cCGAGGggacCGAgGC-CGCCGCcgCGGACGc -3'
miRNA:   3'- -GCUCCa---GUUgUGcGUGGCGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 85885 0.68 0.807562
Target:  5'- aCGAGGUCAucgcggcGCACGaCGCCGUggcCGuGCAg -3'
miRNA:   3'- -GCUCCAGU-------UGUGC-GUGGCGa--GCcUGU- -5'
29422 3' -56.2 NC_006151.1 + 10917 0.68 0.825661
Target:  5'- cCGGGGUCGGgccCACgGCGCCGagggUGGGCGc -3'
miRNA:   3'- -GCUCCAGUU---GUG-CGUGGCga--GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 99585 0.68 0.80844
Target:  5'- gCGAGGUggCGGCGgccgaGCGCCGCgcCGGGCu -3'
miRNA:   3'- -GCUCCA--GUUGUg----CGUGGCGa-GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 86722 0.68 0.829023
Target:  5'- --uGGUCGcgGCGCGcCGCCGCgaggccggcgugcgCGGACAc -3'
miRNA:   3'- gcuCCAGU--UGUGC-GUGGCGa-------------GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 84573 0.68 0.825661
Target:  5'- gCGAGGgccUCGACGCGCGCCucgcGCUgGcGCAc -3'
miRNA:   3'- -GCUCC---AGUUGUGCGUGG----CGAgCcUGU- -5'
29422 3' -56.2 NC_006151.1 + 63790 0.68 0.825661
Target:  5'- gCGGGGUCGGCcgucgccaGCGCcUCGC-CGGGCc -3'
miRNA:   3'- -GCUCCAGUUG--------UGCGuGGCGaGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 81429 0.68 0.817134
Target:  5'- cCGAGGUCGcgGCgcagcgagacgGCGCACgGCgagaGGACGu -3'
miRNA:   3'- -GCUCCAGU--UG-----------UGCGUGgCGag--CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 130263 0.68 0.817134
Target:  5'- aGAGGcCGGCGCGCGgccCCGaggccgCGGGCGc -3'
miRNA:   3'- gCUCCaGUUGUGCGU---GGCga----GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 67870 0.68 0.80844
Target:  5'- cCGAGGUgGcGCGCGCGCCaGCccgCgGGGCAc -3'
miRNA:   3'- -GCUCCAgU-UGUGCGUGG-CGa--G-CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 46741 0.68 0.80844
Target:  5'- cCGGGGUCGgcgaACAC-CGCCGCUUcGGCu -3'
miRNA:   3'- -GCUCCAGU----UGUGcGUGGCGAGcCUGu -5'
29422 3' -56.2 NC_006151.1 + 39750 0.68 0.80844
Target:  5'- uCGGGGacccggacuUUGACGCggGCGCCGCcuUCGGGCAc -3'
miRNA:   3'- -GCUCC---------AGUUGUG--CGUGGCG--AGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 62096 0.67 0.850164
Target:  5'- gCGcGGUCGGCcuggGCGCgGCCGUggUCGGGCu -3'
miRNA:   3'- -GCuCCAGUUG----UGCG-UGGCG--AGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 118579 0.67 0.842184
Target:  5'- aCGAGGcgUGGCGCGUGCCGCUCu---- -3'
miRNA:   3'- -GCUCCa-GUUGUGCGUGGCGAGccugu -5'
29422 3' -56.2 NC_006151.1 + 14154 0.67 0.842184
Target:  5'- aCGAGGagc-CGCGCcCCGCUCgaGGACGc -3'
miRNA:   3'- -GCUCCaguuGUGCGuGGCGAG--CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 8326 0.67 0.834013
Target:  5'- cCGGGGcgcgcgggccUCGAuCGCGC-CCGC-CGGACGc -3'
miRNA:   3'- -GCUCC----------AGUU-GUGCGuGGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 122679 0.67 0.831527
Target:  5'- cCGAGGU--GCGCGCggcgGCCGUggagcucgcgcucuUCGGGCGg -3'
miRNA:   3'- -GCUCCAguUGUGCG----UGGCG--------------AGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 8117 0.67 0.834013
Target:  5'- gGGGGUCGGaGCGCGgaccCCGCcCGGugGg -3'
miRNA:   3'- gCUCCAGUUgUGCGU----GGCGaGCCugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.