miRNA display CGI


Results 81 - 100 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 40148 0.67 0.872904
Target:  5'- gCGAcGGcCGGCccCGCGgcCCGCUCGGGCc -3'
miRNA:   3'- -GCU-CCaGUUGu-GCGU--GGCGAGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 118579 0.67 0.842184
Target:  5'- aCGAGGcgUGGCGCGUGCCGCUCu---- -3'
miRNA:   3'- -GCUCCa-GUUGUGCGUGGCGAGccugu -5'
29422 3' -56.2 NC_006151.1 + 85706 0.67 0.86553
Target:  5'- aCGucGUCGugGCcUACCGCgCGGACGa -3'
miRNA:   3'- -GCucCAGUugUGcGUGGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 45071 0.67 0.86553
Target:  5'- aCGGcuGGagAGCGCGCACCGCgCGGugugGCGu -3'
miRNA:   3'- -GCU--CCagUUGUGCGUGGCGaGCC----UGU- -5'
29422 3' -56.2 NC_006151.1 + 120817 0.67 0.857949
Target:  5'- gCGAGGUgCuGgACGCGCCGCgCGacGACAc -3'
miRNA:   3'- -GCUCCA-GuUgUGCGUGGCGaGC--CUGU- -5'
29422 3' -56.2 NC_006151.1 + 2313 0.67 0.872176
Target:  5'- cCGGGGUCAGCACcagcgggGCGgCCucgGCgUCGGGCu -3'
miRNA:   3'- -GCUCCAGUUGUG-------CGU-GG---CG-AGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 122679 0.67 0.831527
Target:  5'- cCGAGGU--GCGCGCggcgGCCGUggagcucgcgcucuUCGGGCGg -3'
miRNA:   3'- -GCUCCAguUGUGCG----UGGCG--------------AGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 8117 0.67 0.834013
Target:  5'- gGGGGUCGGaGCGCGgaccCCGCcCGGugGg -3'
miRNA:   3'- gCUCCAGUUgUGCGU----GGCGaGCCugU- -5'
29422 3' -56.2 NC_006151.1 + 118439 0.67 0.872904
Target:  5'- gGAGGUguGCGCGCggcucgGCCugGCcgCGGACGc -3'
miRNA:   3'- gCUCCAguUGUGCG------UGG--CGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 61647 0.67 0.872904
Target:  5'- gCGGcGuGUgGACGCGCcaGCCGCUCGuGGCc -3'
miRNA:   3'- -GCU-C-CAgUUGUGCG--UGGCGAGC-CUGu -5'
29422 3' -56.2 NC_006151.1 + 14154 0.67 0.842184
Target:  5'- aCGAGGagc-CGCGCcCCGCUCgaGGACGc -3'
miRNA:   3'- -GCUCCaguuGUGCGuGGCGAG--CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 62096 0.67 0.850164
Target:  5'- gCGcGGUCGGCcuggGCGCgGCCGUggUCGGGCu -3'
miRNA:   3'- -GCuCCAGUUG----UGCG-UGGCG--AGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 138085 0.67 0.857949
Target:  5'- gCGAGGccuucuucgccCGGCGCaCGCCGCUggCGGACAu -3'
miRNA:   3'- -GCUCCa----------GUUGUGcGUGGCGA--GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 138730 0.66 0.910712
Target:  5'- -cGGGUCGuguACGCGCGCCGCgacugCcgcgccuaccugugGGACGu -3'
miRNA:   3'- gcUCCAGU---UGUGCGUGGCGa----G--------------CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 57232 0.66 0.906469
Target:  5'- uCGcAGG-CGGCGCGCGCgGcCUCGG-CGu -3'
miRNA:   3'- -GC-UCCaGUUGUGCGUGgC-GAGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 5620 0.66 0.906469
Target:  5'- gGAGGgggCGcCGC-CGCCGC-CGGGCGc -3'
miRNA:   3'- gCUCCa--GUuGUGcGUGGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 54633 0.66 0.89372
Target:  5'- cCGGGGggaagcggCGGCGCgaGCGCUGCgUGGACGa -3'
miRNA:   3'- -GCUCCa-------GUUGUG--CGUGGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 88902 0.66 0.882866
Target:  5'- uCGGGGUCGGCgucgggcgagcggaaGCGC-CCGCggcgguagaagCGGACc -3'
miRNA:   3'- -GCUCCAGUUG---------------UGCGuGGCGa----------GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 60470 0.66 0.880767
Target:  5'- gGAGGgcgugaAGCGCGCGCagaagcgcgccacgaGCUCGGAgAa -3'
miRNA:   3'- gCUCCag----UUGUGCGUGg--------------CGAGCCUgU- -5'
29422 3' -56.2 NC_006151.1 + 103575 0.66 0.880063
Target:  5'- --uGGUCAACGCGC-UCGC--GGACAa -3'
miRNA:   3'- gcuCCAGUUGUGCGuGGCGagCCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.