miRNA display CGI


Results 101 - 120 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 71072 0.66 0.906469
Target:  5'- cCGuGGUCuucuaccacCACgGCGCCGCgggcgCGGGCGc -3'
miRNA:   3'- -GCuCCAGuu-------GUG-CGUGGCGa----GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 122373 0.66 0.906469
Target:  5'- aCGGGcUCGACgagGCGCGCCGC--GGGCGc -3'
miRNA:   3'- -GCUCcAGUUG---UGCGUGGCGagCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 53627 0.66 0.910113
Target:  5'- -cAGGUCGcgcuucugcagcuCGCGCACCGUcggCGGGCu -3'
miRNA:   3'- gcUCCAGUu------------GUGCGUGGCGa--GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 138730 0.66 0.910712
Target:  5'- -cGGGUCGuguACGCGCGCCGCgacugCcgcgccuaccugugGGACGu -3'
miRNA:   3'- gcUCCAGU---UGUGCGUGGCGa----G--------------CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 141559 0.66 0.912495
Target:  5'- aGAGGgucCGGCGCGauccucCGCCGCUccucccccCGGGCGa -3'
miRNA:   3'- gCUCCa--GUUGUGC------GUGGCGA--------GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 55409 0.66 0.912495
Target:  5'- gCGAGca-GGCccuGCGCGCCGCgcaggCGGGCGc -3'
miRNA:   3'- -GCUCcagUUG---UGCGUGGCGa----GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 73383 0.66 0.906469
Target:  5'- aCGGGGgcgcgCAGCGCGgcCGCCGCguacgCGGcCGu -3'
miRNA:   3'- -GCUCCa----GUUGUGC--GUGGCGa----GCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 21588 0.66 0.906469
Target:  5'- gCGGGGUCgAugGCGUACgGCguggCGG-CGg -3'
miRNA:   3'- -GCUCCAG-UugUGCGUGgCGa---GCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 60470 0.66 0.880767
Target:  5'- gGAGGgcgugaAGCGCGCGCagaagcgcgccacgaGCUCGGAgAa -3'
miRNA:   3'- gCUCCag----UUGUGCGUGg--------------CGAGCCUgU- -5'
29422 3' -56.2 NC_006151.1 + 88902 0.66 0.882866
Target:  5'- uCGGGGUCGGCgucgggcgagcggaaGCGC-CCGCggcgguagaagCGGACc -3'
miRNA:   3'- -GCUCCAGUUG---------------UGCGuGGCGa----------GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 104896 0.66 0.877938
Target:  5'- gCGAGGUgguggacgcggcggCGGCGCGCgACCGCgacgGGGCc -3'
miRNA:   3'- -GCUCCA--------------GUUGUGCG-UGGCGag--CCUGu -5'
29422 3' -56.2 NC_006151.1 + 58123 0.66 0.880063
Target:  5'- gCGGGGUCGcgucGCcCGCGCCGUacgCGGcCGc -3'
miRNA:   3'- -GCUCCAGU----UGuGCGUGGCGa--GCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 54633 0.66 0.89372
Target:  5'- cCGGGGggaagcggCGGCGCgaGCGCUGCgUGGACGa -3'
miRNA:   3'- -GCUCCa-------GUUGUG--CGUGGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 129344 0.66 0.880063
Target:  5'- cCGGGG-CGGCcgGCGCGCCgauaaaugcGCUCGGGg- -3'
miRNA:   3'- -GCUCCaGUUG--UGCGUGG---------CGAGCCUgu -5'
29422 3' -56.2 NC_006151.1 + 56567 0.66 0.89372
Target:  5'- -cGGG-CGACGCGcCGCCGCccgaCGGGCu -3'
miRNA:   3'- gcUCCaGUUGUGC-GUGGCGa---GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 3352 0.66 0.900209
Target:  5'- aCGAGG---GCGCGgGCCacCUCGGGCGg -3'
miRNA:   3'- -GCUCCaguUGUGCgUGGc-GAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 17087 0.66 0.900209
Target:  5'- -cGGGUCAgGCGCGCGCCcgUCGGGg- -3'
miRNA:   3'- gcUCCAGU-UGUGCGUGGcgAGCCUgu -5'
29422 3' -56.2 NC_006151.1 + 3448 0.66 0.900209
Target:  5'- cCGccGUCGGgCGCGgGgUGCUCGGGCAu -3'
miRNA:   3'- -GCucCAGUU-GUGCgUgGCGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 68076 0.66 0.900209
Target:  5'- -cAGGUCGGCGgGCAgCGcCUCGaGGCu -3'
miRNA:   3'- gcUCCAGUUGUgCGUgGC-GAGC-CUGu -5'
29422 3' -56.2 NC_006151.1 + 84085 0.66 0.900209
Target:  5'- uCGAGcUCAAgACGUGCCGCUuccccCGGAa- -3'
miRNA:   3'- -GCUCcAGUUgUGCGUGGCGA-----GCCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.