miRNA display CGI

Results 121 - 127 of 127 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
29422	3'	-56.2	NC_006151.1	+	3352	0.66	0.900209
	Target:  5'- aCGAGG---GCGCGgGCCacCUCGGGCGg -3' miRNA:   3'- -GCUCCaguUGUGCgUGGc-GAGCCUGU- -5'
29422	3'	-56.2	NC_006151.1	+	17087	0.66	0.900209
	Target:  5'- -cGGGUCAgGCGCGCGCCcgUCGGGg- -3' miRNA:   3'- gcUCCAGU-UGUGCGUGGcgAGCCUgu -5'
29422	3'	-56.2	NC_006151.1	+	3448	0.66	0.900209
	Target:  5'- cCGccGUCGGgCGCGgGgUGCUCGGGCAu -3' miRNA:   3'- -GCucCAGUU-GUGCgUgGCGAGCCUGU- -5'
29422	3'	-56.2	NC_006151.1	+	68076	0.66	0.900209
	Target:  5'- -cAGGUCGGCGgGCAgCGcCUCGaGGCu -3' miRNA:   3'- gcUCCAGUUGUgCGUgGC-GAGC-CUGu -5'
29422	3'	-56.2	NC_006151.1	+	84085	0.66	0.900209
	Target:  5'- uCGAGcUCAAgACGUGCCGCUuccccCGGAa- -3' miRNA:   3'- -GCUCcAGUUgUGCGUGGCGA-----GCCUgu -5'
29422	3'	-56.2	NC_006151.1	+	21588	0.66	0.906469
	Target:  5'- gCGGGGUCgAugGCGUACgGCguggCGG-CGg -3' miRNA:   3'- -GCUCCAG-UugUGCGUGgCGa---GCCuGU- -5'
29422	3'	-56.2	NC_006151.1	+	104896	0.66	0.877938
	Target:  5'- gCGAGGUgguggacgcggcggCGGCGCGCgACCGCgacgGGGCc -3' miRNA:   3'- -GCUCCA--------------GUUGUGCG-UGGCGag--CCUGu -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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